Best TWAS P=5.42e-14 · Best GWAS P=4.18e-12 conditioned to 0.232
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DLST | 0.09 | 0.11 | lasso | 2 | 0.11 | 4.0e-13 | -6.4 | 6.6 | 4.2e-11 | -0.66 | 0.08 | 0.92 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | RPS6KL1 | 0.04 | 0.02 | lasso | 5 | 0.02 | 4.8e-04 | 4.4 | -5.3 | 1.1e-07 | 0.67 | 0.18 | 0.49 | FALSE |
3 | GTEx | Adipose Subcutaneous | YLPM1 | 0.10 | 0.03 | lasso | 6 | 0.02 | 7.9e-03 | -6.3 | 6.6 | 3.0e-11 | -0.77 | 0.08 | 0.48 | FALSE |
4 | GTEx | Adrenal Gland | RPS6KL1 | 0.21 | 0.13 | enet | 25 | 0.15 | 4.4e-06 | 4.8 | 5.2 | 2.1e-07 | -0.46 | 0.36 | 0.55 | FALSE |
5 | GTEx | Muscle Skeletal | DLST | 0.28 | 0.26 | enet | 23 | 0.26 | 2.1e-25 | -6.7 | -6.8 | 1.2e-11 | 0.93 | 0.02 | 0.98 | TRUE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | RPS6KL1 | 0.08 | 0.08 | enet | 11 | 0.07 | 1.5e-04 | 6.3 | 7.0 | 2.4e-12 | -0.72 | 0.08 | 0.91 | FALSE |
7 | GTEx | Testis | AREL1 | 0.20 | 0.14 | enet | 34 | 0.13 | 2.1e-06 | 6.3 | 7.5 | 5.4e-14 | -0.57 | 0.14 | 0.86 | TRUE |
8 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RPS6KL1 | 0.03 | 0.02 | lasso | 3 | 0.02 | 8.5e-06 | 6.3 | 6.2 | 6.2e-10 | -0.58 | 0.12 | 0.88 | FALSE |
9 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RPS6KL1 | 0.04 | 0.04 | lasso | 3 | 0.03 | 1.8e-04 | 6.3 | 6.0 | 1.8e-09 | -0.59 | 0.11 | 0.82 | TRUE |
10 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RPS6KL1 | 0.09 | 0.10 | blup | 49 | 0.11 | 5.1e-07 | -4.3 | 5.5 | 4.7e-08 | -0.77 | 0.64 | 0.33 | FALSE |
11 | The Cancer Genome Atlas | Lung Adenocarcinoma | RPS6KL1 | 0.03 | 0.01 | blup | 49 | 0.02 | 2.3e-03 | 5.0 | 5.7 | 9.0e-09 | -0.73 | 0.04 | 0.33 | FALSE |