Best TWAS P=3.92e-11 · Best GWAS P=1.82e-17 conditioned to 3.97e-12
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | LEMD3 | 0.04 | 0.01 | enet | 13 | 0.03 | 7.3e-05 | -5.9 | -5.4 | 8.7e-08 | 0.30 | 0.38 | 0.02 | FALSE |
| 2 | GTEx | Adipose Visceral Omentum | LEMD3 | 0.14 | 0.05 | lasso | 8 | 0.05 | 1.1e-03 | -5.0 | -6.0 | 2.3e-09 | 0.25 | 0.46 | 0.03 | FALSE |
| 3 | GTEx | Cells Transformed fibroblasts | LEMD3 | 0.09 | 0.10 | lasso | 3 | 0.09 | 4.4e-07 | -5.6 | -5.7 | 1.5e-08 | 0.25 | 0.97 | 0.00 | FALSE |
| 4 | GTEx | Esophagus Muscularis | LEMD3 | 0.09 | 0.09 | enet | 7 | 0.09 | 4.3e-06 | -5.9 | -5.9 | 4.6e-09 | 0.25 | 0.98 | 0.00 | FALSE |
| 5 | GTEx | Heart Atrial Appendage | LEMD3 | 0.12 | 0.03 | enet | 12 | 0.06 | 7.5e-04 | -5.0 | -5.3 | 1.5e-07 | 0.27 | 0.34 | 0.03 | FALSE |
| 6 | GTEx | Nerve Tibial | LEMD3 | 0.12 | 0.14 | enet | 13 | 0.16 | 2.0e-11 | -5.6 | -6.6 | 3.9e-11 | 0.28 | 1.00 | 0.00 | TRUE |
| 7 | GTEx | Testis | LEMD3 | 0.15 | 0.15 | lasso | 7 | 0.16 | 1.9e-07 | -4.9 | -5.1 | 2.9e-07 | 0.23 | 0.71 | 0.02 | FALSE |
| 8 | NTR | Blood | TBC1D30 | 0.01 | 0.00 | bslmm | 327 | 0.00 | 1.6e-02 | -1.3 | -5.9 | 4.4e-09 | 0.23 | 0.07 | 0.12 | FALSE |
| 9 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | LEMD3 | 0.02 | 0.02 | blup | 36 | 0.02 | 5.9e-03 | -6.6 | -6.5 | 1.0e-10 | 0.29 | 0.01 | 0.78 | FALSE |