Best TWAS P=7.88e-08 · Best GWAS P=1.88e-08 conditioned to 0.0661
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | A2LD1 | 0.02 | 0.03 | lasso | 2 | 0.02 | 1.9e-03 | -5.1 | -5.3 | 9.9e-08 | 0.87 | 0.03 | 0.83 | FALSE |
| 2 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | A2LD1 | 0.10 | 0.15 | enet | 9 | 0.15 | 6.1e-17 | -5.2 | -5.4 | 7.9e-08 | 0.89 | 0.03 | 0.97 | TRUE |