TWAS
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Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Body mass index (BMI)
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chr12:109,866,528-111,634,281
Best TWAS P=2.98e-08 · Best GWAS P=1.37e-07 conditioned to 1
109.8M
110M
110.2M
110.4M
110.6M
110.8M
111M
111.2M
111.4M
111.6M
0
2
4
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Muscle Skeletal
IFT81
0.08
0.08
lasso
5
0.07
1.7e-07
5.2
5.5
3.0e-08
0.98
0.02
0.98
TRUE
4
GTEx
Skin Not Sun Exposed Suprapubic
VPS29
0.06
0.01
lasso
3
0.01
6.9e-02
5.2
5.3
1.2e-07
0.90
0.03
0.73
FALSE
1
GTEx
Cells EBV-transformed lymphocytes
ARPC3
0.13
0.09
lasso
4
0.04
2.0e-02
5.2
-5.2
1.9e-07
-0.97
0.02
0.85
FALSE
5
GTEx
Spleen
VPS29
0.24
0.01
enet
14
0.04
2.9e-02
4.0
5.1
2.7e-07
0.88
0.03
0.69
FALSE
2
GTEx
Muscle Skeletal
ARPC3
0.14
0.11
enet
23
0.10
2.2e-10
5.0
-5.1
2.8e-07
-0.94
0.02
0.98
FALSE