TWAS
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Usage
Models
Genes
Traits
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Traits
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Body mass index (BMI)
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chr13:111,270,363-112,552,523
Best TWAS P=2.48e-10 · Best GWAS P=2.25e-13 conditioned to 3.65e-13
111.2M
111.4M
111.6M
111.8M
112M
112.2M
112.4M
112.6M
0
2
4
6
8
10
12
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Frontal Cortex BA9
TEX29
0.45
0.10
lasso
8
0.24
4.2e-07
-5.0
-6.3
2.5e-10
-0.01
0.12
0.06
TRUE
2
The Cancer Genome Atlas
Brain Lower Grade Glioma
ARHGEF7
0.09
0.07
blup
142
0.08
3.1e-09
-5.2
6.1
1.2e-09
-0.04
0.95
0.05
FALSE