TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Body mass index (BMI)
:
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→
chr2:26,223,547-28,129,391
Best TWAS P=1.1e-12 · Best GWAS P=4.95e-12 conditioned to 1
26.5M
27M
27.5M
28M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
ROSMAP
Brain Pre-frontal Cortex
KCNK3
0.24
0.15
lasso
3
0.15
6.5e-19
6.9
-7.1
1.1e-12
-0.99
0.00
1.00
TRUE
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
SUPT7L
0.05
0.02
blup
28
0.04
5.2e-05
4.5
5.3
1.3e-07
0.10
0.00
0.90
TRUE
2
ROSMAP
Brain Pre-frontal Cortex
SLC35F6
0.05
0.04
enet
11
0.04
8.0e-06
-4.9
5.2
1.8e-07
0.73
0.23
0.76
FALSE