TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Body mass index (BMI)
:
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→
chr3:182,826,316-184,700,426
Best TWAS P=8.78e-11 · Best GWAS P=8.3e-10 conditioned to 0.0788
183M
183.5M
184M
184.5M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
METSIM
Adipose
MAP6D1
0.06
0.05
bslmm
473
0.06
2.3e-09
5.6
6.5
8.8e-11
0.68
0.16
0.84
TRUE
5
The Cancer Genome Atlas
Lung Adenocarcinoma
PSMD2
0.09
0.02
blup
50
0.05
1.2e-06
-3.1
5.5
3.6e-08
0.08
0.09
0.51
TRUE
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
ECE2
0.04
0.02
blup
61
0.03
3.5e-04
5.3
5.9
2.9e-09
0.15
0.01
0.98
FALSE
1
GTEx
Lung
YEATS2-AS1
0.13
0.03
enet
27
0.07
3.3e-06
5.6
-5.4
8.2e-08
-0.64
0.10
0.85
FALSE
2
GTEx
Pituitary
ECE2
0.52
0.30
lasso
7
0.23
1.5e-06
5.3
5.3
1.4e-07
0.14
0.13
0.74
FALSE