TWAS
hub
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Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Body mass index (BMI)
:
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chr3:195,279,119-196,855,644
Best TWAS P=9.97e-09 · Best GWAS P=1.8e-07 conditioned to 0.0511
195.2M
195.4M
195.6M
195.8M
196M
196.2M
196.4M
196.6M
196.8M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
GTEx
Breast Mammary Tissue
UBXN7
0.20
0.00
enet
16
0.02
0.0352
-3.7
-5.7
1.0e-08
-0.65
0.03
0.81
TRUE
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
UBXN7
0.02
0.01
blup
45
0.02
0.0042
4.0
-5.6
2.6e-08
-0.76
0.02
0.38
FALSE
3
GTEx
Stomach
SLC51A
0.13
0.06
enet
12
0.03
0.0193
4.8
-5.4
8.0e-08
-0.86
0.01
0.95
FALSE
1
GTEx
Breast Mammary Tissue
PCYT1A
0.11
0.03
lasso
3
0.00
0.3920
5.2
-5.2
2.4e-07
-0.96
0.02
0.85
FALSE