Best TWAS P=1.36e-11 · Best GWAS P=1.23e-10 conditioned to 0.000108
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | GRK4 | 0.30 | 0.39 | lasso | 6 | 0.41 | 1.2e-35 | -5.4 | 5.7 | 9.0e-09 | 0.13 | 0.26 | 0.74 | FALSE |
2 | GTEx | Adipose Visceral Omentum | GRK4 | 0.32 | 0.38 | lasso | 4 | 0.40 | 5.5e-22 | -5.4 | 5.5 | 3.0e-08 | 0.12 | 0.32 | 0.68 | FALSE |
3 | GTEx | Adrenal Gland | GRK4 | 0.38 | 0.25 | lasso | 5 | 0.29 | 5.1e-11 | -5.4 | 5.8 | 7.3e-09 | 0.13 | 0.43 | 0.57 | FALSE |
4 | GTEx | Artery Aorta | GRK4 | 0.29 | 0.38 | enet | 11 | 0.40 | 1.3e-23 | -5.4 | 5.7 | 1.1e-08 | 0.12 | 0.33 | 0.67 | FALSE |
5 | GTEx | Artery Coronary | GRK4 | 0.27 | 0.24 | lasso | 3 | 0.22 | 6.7e-08 | -5.4 | 5.5 | 4.0e-08 | 0.12 | 0.27 | 0.73 | FALSE |
6 | GTEx | Artery Tibial | GRK4 | 0.34 | 0.35 | lasso | 4 | 0.35 | 1.1e-28 | -5.4 | 5.5 | 2.9e-08 | 0.13 | 0.44 | 0.56 | FALSE |
7 | GTEx | Brain Cortex | GRK4 | 0.25 | 0.26 | lasso | 4 | 0.25 | 1.7e-07 | -5.4 | 5.6 | 2.5e-08 | 0.12 | 0.47 | 0.51 | FALSE |
8 | GTEx | Breast Mammary Tissue | GRK4 | 0.27 | 0.32 | enet | 11 | 0.32 | 5.3e-17 | -5.4 | 5.5 | 3.2e-08 | 0.13 | 0.41 | 0.59 | FALSE |
9 | GTEx | Breast Mammary Tissue (Female) | GRK4 | 0.23 | 0.24 | lasso | 3 | 0.24 | 1.1e-07 | -5.4 | 5.5 | 3.4e-08 | 0.12 | 0.30 | 0.69 | FALSE |
10 | GTEx | Cells Transformed fibroblasts | NOP14 | 0.12 | 0.06 | enet | 11 | 0.09 | 2.9e-07 | -5.0 | 6.8 | 1.4e-11 | 0.17 | 0.33 | 0.64 | TRUE |
11 | GTEx | Cells Transformed fibroblasts | GRK4 | 0.32 | 0.35 | lasso | 7 | 0.37 | 3.1e-29 | -5.4 | 5.6 | 2.6e-08 | 0.13 | 0.24 | 0.76 | FALSE |
12 | GTEx | Colon Sigmoid | GRK4 | 0.26 | 0.30 | lasso | 2 | 0.28 | 2.6e-10 | -5.4 | 5.4 | 6.4e-08 | 0.12 | 0.29 | 0.70 | FALSE |
13 | GTEx | Colon Transverse | GRK4 | 0.27 | 0.25 | enet | 18 | 0.25 | 2.4e-12 | -5.4 | 6.2 | 4.5e-10 | 0.15 | 0.14 | 0.86 | FALSE |
14 | GTEx | Esophagus Gastroesophageal Junction | GRK4 | 0.37 | 0.23 | lasso | 9 | 0.22 | 2.2e-08 | -5.6 | 5.7 | 1.3e-08 | 0.13 | 0.18 | 0.82 | FALSE |
15 | GTEx | Esophagus Mucosa | GRK4 | 0.28 | 0.35 | lasso | 4 | 0.34 | 3.1e-23 | -5.4 | 5.4 | 5.5e-08 | 0.12 | 0.44 | 0.56 | FALSE |
16 | GTEx | Esophagus Muscularis | GRK4 | 0.29 | 0.30 | enet | 7 | 0.30 | 2.5e-18 | -5.4 | 5.5 | 3.6e-08 | 0.13 | 0.44 | 0.56 | FALSE |
17 | GTEx | Lung | ADD1 | 0.09 | 0.02 | enet | 6 | 0.01 | 3.5e-02 | 3.9 | 6.0 | 1.9e-09 | 0.17 | 0.42 | 0.24 | FALSE |
18 | GTEx | Lung | GRK4 | 0.26 | 0.36 | lasso | 4 | 0.36 | 3.3e-29 | -5.4 | 5.6 | 2.4e-08 | 0.12 | 0.41 | 0.59 | FALSE |
19 | GTEx | Lung | HTT | 0.06 | 0.00 | lasso | 4 | 0.00 | 5.8e-01 | -5.4 | 6.0 | 2.5e-09 | 0.16 | 0.14 | 0.17 | FALSE |
20 | GTEx | Nerve Tibial | GRK4 | 0.29 | 0.38 | lasso | 3 | 0.39 | 4.6e-29 | -5.4 | 5.5 | 4.0e-08 | 0.13 | 0.43 | 0.57 | FALSE |
21 | GTEx | Ovary | GRK4 | 0.25 | 0.19 | lasso | 8 | 0.18 | 3.6e-05 | -5.4 | 5.5 | 3.9e-08 | 0.13 | 0.20 | 0.28 | FALSE |
22 | GTEx | Pituitary | GRK4 | 0.17 | 0.00 | enet | 6 | -0.01 | 5.6e-01 | -6.0 | 5.9 | 4.3e-09 | 0.11 | 0.07 | 0.34 | FALSE |
23 | GTEx | Skin Not Sun Exposed Suprapubic | GRK4 | 0.38 | 0.43 | lasso | 4 | 0.42 | 9.6e-25 | -5.4 | 5.5 | 3.6e-08 | 0.12 | 0.42 | 0.58 | FALSE |
24 | GTEx | Spleen | GRK4 | 0.24 | 0.16 | lasso | 5 | 0.12 | 4.8e-04 | -5.4 | 5.3 | 1.0e-07 | 0.11 | 0.17 | 0.34 | FALSE |
25 | GTEx | Stomach | GRK4 | 0.22 | 0.19 | lasso | 7 | 0.19 | 2.6e-09 | -5.6 | 5.8 | 7.7e-09 | 0.10 | 0.30 | 0.70 | FALSE |
26 | GTEx | Thyroid | NOP14 | 0.09 | 0.04 | lasso | 5 | 0.03 | 4.5e-03 | -5.2 | 5.4 | 5.2e-08 | 0.13 | 0.50 | 0.37 | FALSE |
27 | GTEx | Thyroid | GRK4 | 0.50 | 0.47 | lasso | 9 | 0.48 | 6.4e-41 | -5.4 | 5.6 | 2.7e-08 | 0.11 | 0.40 | 0.60 | FALSE |
28 | GTEx | Thyroid | NOP14-AS1 | 0.18 | 0.09 | lasso | 8 | 0.11 | 1.3e-08 | -5.4 | 5.7 | 1.4e-08 | 0.14 | 0.42 | 0.58 | FALSE |
29 | GTEx | Uterus | GRK4 | 0.31 | 0.24 | enet | 29 | 0.32 | 2.5e-07 | -5.6 | 5.2 | 1.8e-07 | 0.08 | 0.14 | 0.63 | FALSE |
30 | GTEx | Vagina | GRK4 | 0.27 | 0.12 | lasso | 4 | 0.11 | 1.6e-03 | -5.4 | 5.5 | 4.2e-08 | 0.12 | 0.15 | 0.23 | FALSE |
31 | GTEx | Whole Blood | GRK4 | 0.08 | 0.10 | lasso | 4 | 0.10 | 1.0e-09 | -5.4 | 5.2 | 1.6e-07 | 0.09 | 0.48 | 0.52 | FALSE |
32 | GTEx | Whole Blood | HTT | 0.10 | 0.00 | enet | 15 | 0.03 | 1.4e-03 | 6.4 | 6.4 | 1.9e-10 | 0.60 | 0.01 | 0.92 | FALSE |
33 | METSIM | Adipose | GRK4 | 0.20 | 0.26 | lasso | 6 | 0.25 | 9.9e-38 | -5.4 | 5.5 | 2.9e-08 | 0.12 | 0.47 | 0.53 | FALSE |
34 | ROSMAP | Brain Pre-frontal Cortex | GRK4 | 0.12 | 0.14 | lasso | 4 | 0.14 | 1.8e-17 | -5.5 | 5.7 | 1.5e-08 | 0.10 | 0.18 | 0.82 | FALSE |
35 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | GRK4 | 0.09 | 0.10 | lasso | 4 | 0.14 | 1.4e-11 | -5.5 | 5.6 | 1.7e-08 | 0.13 | 0.07 | 0.93 | FALSE |
36 | The Cancer Genome Atlas | Breast Invasive Carcinoma | GRK4 | 0.11 | 0.17 | lasso | 7 | 0.18 | 6.7e-36 | -5.4 | 5.6 | 2.1e-08 | 0.13 | 0.05 | 0.95 | FALSE |
37 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | GRK4 | 0.09 | 0.12 | blup | 76 | 0.12 | 1.7e-06 | -5.4 | 5.9 | 3.6e-09 | 0.14 | 0.04 | 0.96 | FALSE |
38 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | RNF4 | 0.14 | 0.02 | blup | 47 | 0.07 | 3.1e-04 | 2.7 | 5.2 | 2.2e-07 | 0.19 | 0.00 | 0.02 | FALSE |
39 | The Cancer Genome Atlas | Colon Adenocarcinoma | GRK4 | 0.18 | 0.23 | blup | 76 | 0.21 | 3.8e-12 | -5.4 | 5.4 | 7.7e-08 | 0.11 | 0.04 | 0.96 | FALSE |
40 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | GRK4 | 0.19 | 0.23 | blup | 77 | 0.22 | 4.2e-24 | -5.4 | 5.3 | 1.1e-07 | 0.14 | 0.08 | 0.92 | FALSE |
41 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C4orf44 | 0.03 | 0.02 | blup | 42 | 0.02 | 8.0e-04 | -4.9 | 5.7 | 9.6e-09 | 0.48 | 0.32 | 0.09 | FALSE |
42 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GRK4 | 0.09 | 0.18 | lasso | 5 | 0.20 | 1.5e-22 | -6.0 | 6.2 | 6.0e-10 | 0.16 | 0.01 | 0.99 | FALSE |
43 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | GRK4 | 0.16 | 0.18 | lasso | 6 | 0.20 | 1.9e-11 | -5.3 | 5.8 | 6.7e-09 | 0.15 | 0.08 | 0.92 | FALSE |
44 | The Cancer Genome Atlas | Lung Adenocarcinoma | C4orf44 | 0.03 | 0.04 | lasso | 4 | 0.05 | 2.9e-06 | -4.9 | 5.9 | 3.0e-09 | 0.48 | 0.50 | 0.43 | TRUE |
45 | The Cancer Genome Atlas | Lung Adenocarcinoma | GRK4 | 0.13 | 0.19 | lasso | 2 | 0.19 | 6.1e-22 | -5.4 | 5.1 | 2.9e-07 | 0.12 | 0.08 | 0.92 | FALSE |
46 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | GRK4 | 0.10 | 0.14 | enet | 16 | 0.14 | 4.6e-15 | -5.4 | 5.6 | 2.1e-08 | 0.12 | 0.06 | 0.94 | FALSE |
47 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | GRK4 | 0.23 | 0.32 | lasso | 5 | 0.31 | 1.0e-13 | -5.4 | 5.5 | 3.6e-08 | 0.12 | 0.06 | 0.94 | FALSE |
48 | The Cancer Genome Atlas | Prostate Adenocarcinoma | GRK4 | 0.12 | 0.13 | lasso | 6 | 0.14 | 6.0e-15 | -5.4 | 5.6 | 2.8e-08 | 0.12 | 0.04 | 0.96 | FALSE |
49 | The Cancer Genome Atlas | Rectum Adenocarcinoma | GRK4 | 0.27 | 0.10 | blup | 76 | 0.13 | 7.3e-04 | -5.4 | 5.9 | 2.8e-09 | 0.14 | 0.04 | 0.79 | FALSE |
50 | The Cancer Genome Atlas | Soft Tissue Sarcoma | GRK4 | 0.08 | 0.07 | blup | 77 | 0.09 | 4.4e-06 | -5.6 | 6.2 | 5.4e-10 | 0.18 | 0.04 | 0.96 | FALSE |
51 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SH3BP2 | 0.08 | 0.03 | blup | 53 | 0.02 | 2.8e-02 | 5.7 | 5.8 | 6.7e-09 | 0.29 | 0.00 | 0.71 | FALSE |
52 | The Cancer Genome Atlas | Stomach Adenocarcinoma | GRK4 | 0.17 | 0.24 | lasso | 6 | 0.24 | 1.2e-17 | -5.4 | 5.7 | 1.0e-08 | 0.13 | 0.05 | 0.95 | FALSE |
53 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | GRK4 | 0.08 | 0.09 | lasso | 1 | 0.06 | 4.2e-03 | -5.5 | 5.5 | 4.3e-08 | 0.13 | 0.03 | 0.72 | FALSE |
54 | The Cancer Genome Atlas | Thyroid Carcinoma | C4orf10 | 0.18 | 0.06 | lasso | 3 | 0.07 | 2.2e-07 | -5.6 | 5.5 | 3.2e-08 | 0.12 | 0.00 | 0.99 | FALSE |
55 | The Cancer Genome Atlas | Thyroid Carcinoma | GRK4 | 0.22 | 0.39 | lasso | 6 | 0.38 | 4.1e-39 | -5.4 | 5.4 | 5.2e-08 | 0.13 | 0.07 | 0.93 | FALSE |
56 | The Cancer Genome Atlas | Thyroid Carcinoma | NOP14 | 0.09 | 0.12 | blup | 57 | 0.13 | 1.4e-12 | -5.3 | 5.3 | 1.4e-07 | 0.14 | 0.10 | 0.90 | FALSE |
57 | The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | GRK4 | 0.11 | 0.12 | lasso | 1 | 0.10 | 8.4e-04 | -5.9 | 5.9 | 4.7e-09 | 0.10 | 0.02 | 0.91 | FALSE |