Best TWAS P=5.68e-10 · Best GWAS P=5.38e-09 conditioned to 0.00203
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | REXO1 | 0.07 | 0.01 | bslmm | 391 | 0.01 | 1.7e-02 | -3.4 | 6.2 | 5.7e-10 | -0.51 | 0.07 | 0.74 | TRUE |
| 2 | GTEx | Esophagus Muscularis | CTB-31O20.6 | 0.16 | 0.07 | lasso | 5 | 0.05 | 7.8e-04 | -5.1 | -5.2 | 2.5e-07 | 0.50 | 0.09 | 0.85 | FALSE |
| 3 | ROSMAP | Brain Pre-frontal Cortex | KLF16 | 0.12 | 0.08 | bslmm | 372 | 0.08 | 1.0e-10 | -5.8 | -5.1 | 2.9e-07 | 0.85 | 0.00 | 1.00 | FALSE |
| 4 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | ATP8B3 | 0.06 | 0.00 | blup | 49 | 0.03 | 2.7e-04 | -1.4 | -5.3 | 1.1e-07 | 0.54 | 0.05 | 0.31 | FALSE |
| 5 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | ATP8B3 | 0.04 | 0.01 | blup | 49 | 0.02 | 2.2e-03 | -5.8 | -5.6 | 2.2e-08 | 0.84 | 0.00 | 0.74 | FALSE |