TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Whole body fat mass
:
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chr4:150,683-1,610,872
Best TWAS P=2.59e-08 · Best GWAS P=7.65e-07 conditioned to 0.0811
0.2M
0.4M
0.6M
0.8M
1M
1.2M
1.4M
1.6M
0
1
2
3
4
5
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Breast Invasive Carcinoma
PCGF3
0.03
0.00
blup
69
0.01
3.7e-03
3.2
5.6
2.6e-08
0.44
0.00
0.04
TRUE
1
CommonMind
Brain Pre-frontal Cortex
SLC26A1
0.12
0.06
bslmm
400
0.08
8.0e-10
4.2
5.3
9.3e-08
0.42
0.05
0.82
TRUE
2
GTEx
Artery Tibial
GAK
0.19
0.03
enet
29
0.10
2.4e-08
-2.9
5.1
2.6e-07
0.57
0.00
0.97
FALSE