Best TWAS P=5.68e-11 · Best GWAS P=7.42e-11 conditioned to 1
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Esophagus Mucosa | MARK3 | 0.11 | 0.03 | lasso | 4 | 0.04 | 1.5e-03 | 6.4 | 6.5 | 5.7e-11 | 0.91 | 0.04 | 0.82 | TRUE |
| 2 | GTEx | Thyroid | TRMT61A | 0.11 | 0.03 | lasso | 4 | 0.02 | 1.2e-02 | 6.4 | -6.2 | 7.9e-10 | -0.95 | 0.01 | 0.98 | TRUE |
| 3 | METSIM | Adipose | TRAF3 | 0.04 | 0.02 | enet | 7 | 0.04 | 4.5e-06 | 5.1 | 5.1 | 2.9e-07 | 0.03 | 0.33 | 0.60 | TRUE |
| 4 | YFS | Blood | MARK3 | 0.04 | 0.04 | lasso | 3 | 0.04 | 1.6e-12 | 6.3 | 6.2 | 4.1e-10 | 0.87 | 0.03 | 0.97 | FALSE |
| 5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CKB | 0.06 | 0.03 | lasso | 3 | 0.03 | 2.5e-06 | -5.1 | -5.3 | 1.2e-07 | -0.41 | 0.74 | 0.10 | TRUE |
| 6 | The Cancer Genome Atlas | Soft Tissue Sarcoma | CINP | 0.08 | 0.02 | blup | 32 | 0.04 | 2.3e-03 | -4.2 | -5.3 | 1.4e-07 | 0.00 | 0.00 | 0.24 | TRUE |
| 7 | The Cancer Genome Atlas | Thyroid Carcinoma | MARK3 | 0.10 | 0.03 | blup | 61 | 0.03 | 4.0e-04 | -5.1 | -5.8 | 7.4e-09 | -0.53 | 0.03 | 0.14 | TRUE |