TWAS
hub
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Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Whole body fat-free mass
:
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chr17:1,717,695-2,453,908
Best TWAS P=3.99e-10 · Best GWAS P=3.86e-09 conditioned to 0.211
1.7M
1.8M
1.9M
2M
2.1M
2.2M
2.3M
2.4M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
SMG6
0.03
0.01
blup
144
0.01
0.00478
5.0
6.2
4.0e-10
0.83
0.08
0.64
TRUE
2
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
SMG6
0.08
0.05
blup
144
0.07
0.00013
5.9
6.0
1.9e-09
0.85
0.01
0.99
FALSE