TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Whole body fat-free mass
:
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→
chr4:88,471,516-88,981,690
Best TWAS P=6.25e-10 · Best GWAS P=3.19e-12 conditioned to 0.000772
88.5M
88.6M
88.7M
88.8M
88.9M
89M
0
2
4
6
8
10
12
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
IBSP
0.08
0.00
blup
77
0.00
1.6e-01
-4.8
6.2
6.3e-10
-0.80
0.02
0.63
TRUE
4
The Cancer Genome Atlas
Lung Adenocarcinoma
IBSP
0.06
0.01
blup
78
0.03
7.7e-05
-7.0
6.1
1.4e-09
-0.84
0.00
0.99
FALSE
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
IBSP
0.05
0.05
lasso
6
0.07
1.2e-13
-7.0
5.9
3.9e-09
-0.89
0.00
1.00
FALSE
2
The Cancer Genome Atlas
Colon Adenocarcinoma
IBSP
0.09
0.02
enet
15
0.07
9.4e-05
-1.5
5.3
8.6e-08
-0.71
0.02
0.62
FALSE