Best TWAS P=5.91e-39 · Best GWAS P=6.73e-38 conditioned to 0.439
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | AMZ1 | 0.19 | 0.12 | enet | 22 | 0.13 | 5.7e-16 | 6.2 | 7.8 | 6.7e-15 | -0.44 | 1.00 | 0.00 | FALSE |
2 | GTEx | Adipose Subcutaneous | GNA12 | 0.11 | 0.08 | lasso | 4 | 0.07 | 1.3e-06 | -8.0 | -8.9 | 5.2e-19 | 0.73 | 0.23 | 0.77 | FALSE |
3 | GTEx | Artery Tibial | GNA12 | 0.24 | 0.13 | enet | 20 | 0.22 | 3.5e-17 | -12.9 | -11.1 | 1.7e-28 | 0.87 | 0.02 | 0.98 | FALSE |
4 | GTEx | Cells EBV-transformed lymphocytes | GNA12 | 0.46 | 0.51 | lasso | 5 | 0.50 | 7.9e-19 | -12.8 | -12.8 | 2.2e-37 | 0.92 | 0.01 | 0.99 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | GNA12 | 0.21 | 0.11 | lasso | 11 | 0.15 | 1.7e-11 | -12.9 | -10.5 | 5.8e-26 | 0.89 | 0.02 | 0.98 | FALSE |
6 | GTEx | Colon Sigmoid | GNA12 | 0.14 | 0.05 | lasso | 3 | 0.03 | 3.6e-02 | -7.9 | -10.7 | 1.3e-26 | 0.84 | 0.03 | 0.90 | FALSE |
7 | GTEx | Colon Transverse | GNA12 | 0.19 | 0.08 | lasso | 4 | 0.10 | 2.3e-05 | 6.5 | -7.5 | 5.2e-14 | 0.64 | 0.24 | 0.74 | FALSE |
8 | GTEx | Esophagus Gastroesophageal Junction | GNA12 | 0.20 | 0.12 | lasso | 6 | 0.12 | 3.4e-05 | -8.0 | -10.8 | 4.7e-27 | 0.85 | 0.05 | 0.94 | FALSE |
9 | GTEx | Esophagus Mucosa | GNA12 | 0.16 | 0.13 | lasso | 3 | 0.13 | 3.0e-09 | -12.7 | -11.7 | 9.4e-32 | 0.89 | 0.01 | 0.99 | FALSE |
10 | GTEx | Esophagus Muscularis | GNA12 | 0.32 | 0.31 | lasso | 3 | 0.34 | 2.1e-21 | -12.9 | -12.4 | 1.6e-35 | 0.98 | 0.00 | 1.00 | FALSE |
11 | GTEx | Lung | GNA12 | 0.16 | 0.08 | enet | 21 | 0.12 | 1.2e-09 | -12.7 | -10.4 | 2.0e-25 | 0.77 | 0.01 | 0.99 | FALSE |
12 | GTEx | Nerve Tibial | GNA12 | 0.31 | 0.34 | lasso | 7 | 0.36 | 9.6e-27 | -8.1 | -10.5 | 6.5e-26 | 0.85 | 0.84 | 0.16 | FALSE |
13 | GTEx | Skin Not Sun Exposed Suprapubic | GNA12 | 0.10 | 0.15 | lasso | 3 | 0.12 | 4.2e-07 | 6.2 | -6.9 | 5.2e-12 | 0.53 | 0.34 | 0.64 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | GNA12 | 0.17 | 0.16 | lasso | 3 | 0.18 | 1.3e-14 | -7.9 | -10.5 | 1.3e-25 | 0.88 | 0.13 | 0.87 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | AC004840.9 | 0.18 | 0.01 | enet | 36 | 0.02 | 3.7e-03 | 2.7 | -5.3 | 1.1e-07 | 0.13 | 0.18 | 0.20 | TRUE |
16 | GTEx | Small Intestine Terminal Ileum | GNA12 | 0.34 | 0.20 | lasso | 5 | 0.16 | 2.4e-04 | -8.1 | -8.8 | 1.7e-18 | 0.73 | 0.07 | 0.77 | FALSE |
17 | GTEx | Stomach | GNA12 | 0.18 | 0.16 | lasso | 2 | 0.13 | 6.6e-07 | -7.9 | -8.1 | 7.7e-16 | 0.68 | 0.45 | 0.54 | FALSE |
18 | GTEx | Whole Blood | GNA12 | 0.09 | 0.01 | enet | 4 | 0.00 | 3.3e-01 | -12.5 | -12.5 | 5.3e-36 | 0.95 | 0.02 | 0.91 | FALSE |
19 | METSIM | Adipose | GNA12 | 0.07 | 0.05 | lasso | 3 | 0.05 | 3.3e-08 | -8.1 | -8.2 | 2.6e-16 | 0.74 | 0.29 | 0.71 | FALSE |
20 | NTR | Blood | GNA12 | 0.07 | 0.03 | bslmm | 597 | 0.06 | 1.3e-17 | -9.4 | -9.1 | 7.7e-20 | 0.63 | 0.92 | 0.08 | FALSE |
21 | ROSMAP | Brain Pre-frontal Cortex | AMZ1 | 0.09 | 0.05 | lasso | 6 | 0.04 | 2.4e-06 | -12.9 | 13.1 | 5.9e-39 | -0.95 | 0.01 | 0.99 | TRUE |
22 | YFS | Blood | GNA12 | 0.23 | 0.15 | bslmm | 570 | 0.25 | 4.5e-82 | 5.9 | -8.1 | 4.6e-16 | 0.51 | 1.00 | 0.00 | FALSE |
23 | The Cancer Genome Atlas | Esophageal Carcinoma | AMZ1 | 0.18 | 0.05 | blup | 69 | 0.05 | 1.4e-02 | 7.9 | -11.0 | 3.2e-28 | 0.74 | 0.01 | 0.69 | FALSE |
24 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | GNA12 | 0.03 | 0.04 | lasso | 1 | 0.04 | 3.0e-05 | -8.0 | -8.1 | 8.5e-16 | 0.70 | 0.07 | 0.78 | FALSE |
25 | The Cancer Genome Atlas | Brain Lower Grade Glioma | AMZ1 | 0.04 | 0.04 | lasso | 3 | 0.02 | 1.3e-03 | 7.9 | 9.2 | 3.5e-20 | -0.64 | 0.03 | 0.92 | FALSE |
26 | The Cancer Genome Atlas | Lung Adenocarcinoma | GNA12 | 0.03 | 0.01 | enet | 7 | 0.02 | 1.5e-03 | 5.2 | -10.3 | 6.8e-25 | 0.78 | 0.06 | 0.73 | FALSE |
27 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AMZ1 | 0.08 | 0.01 | blup | 71 | 0.05 | 1.3e-05 | -8.0 | 5.7 | 1.3e-08 | -0.64 | 0.04 | 0.80 | FALSE |
28 | The Cancer Genome Atlas | Thyroid Carcinoma | AMZ1 | 0.32 | 0.04 | enet | 19 | 0.20 | 3.3e-19 | -9.4 | 5.7 | 1.6e-08 | -0.56 | 0.16 | 0.84 | FALSE |