Best TWAS P=6.97e-09 · Best GWAS P=2.4e-25 conditioned to 4.51e-20
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Esophagus Mucosa | RMND1 | 0.34 | 0.09 | lasso | 6 | 0.19 | 4.8e-13 | 4.7 | -5.3 | 1.2e-07 | -0.01 | 1.00 | 0.00 | FALSE |
2 | ROSMAP | Brain Pre-frontal Cortex | SYNE1 | 0.12 | 0.01 | blup | 875 | 0.05 | 6.9e-07 | 1.0 | 5.4 | 6.4e-08 | 0.26 | 0.63 | 0.08 | TRUE |
3 | YFS | Blood | RGS17 | 0.10 | 0.11 | enet | 11 | 0.11 | 6.3e-33 | 5.3 | 5.2 | 2.5e-07 | -0.01 | 0.01 | 0.99 | FALSE |
4 | YFS | Blood | RMND1 | 0.06 | 0.06 | lasso | 12 | 0.05 | 6.5e-16 | 4.9 | -5.5 | 4.9e-08 | -0.01 | 1.00 | 0.00 | FALSE |
5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RGS17 | 0.02 | 0.02 | enet | 5 | 0.02 | 1.8e-04 | 5.3 | -5.3 | 1.4e-07 | 0.02 | 0.01 | 0.98 | TRUE |
6 | The Cancer Genome Atlas | Breast Invasive Carcinoma | RMND1 | 0.02 | 0.00 | blup | 57 | 0.01 | 3.1e-03 | 4.6 | -5.5 | 3.5e-08 | -0.02 | 0.00 | 0.61 | FALSE |
7 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | RMND1 | 0.16 | 0.10 | lasso | 7 | 0.12 | 1.6e-06 | 4.9 | -5.8 | 7.5e-09 | -0.02 | 0.02 | 0.98 | FALSE |
8 | The Cancer Genome Atlas | Esophageal Carcinoma | RMND1 | 0.12 | 0.09 | enet | 9 | 0.10 | 4.2e-04 | 4.1 | -5.2 | 2.2e-07 | -0.03 | 0.08 | 0.28 | FALSE |
9 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | RMND1 | 0.07 | 0.06 | blup | 58 | 0.09 | 1.4e-10 | 4.9 | -5.7 | 1.1e-08 | 0.01 | 0.18 | 0.82 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RMND1 | 0.09 | 0.10 | lasso | 4 | 0.10 | 1.6e-11 | 4.7 | -5.3 | 1.2e-07 | 0.03 | 0.51 | 0.49 | FALSE |
11 | The Cancer Genome Atlas | Lung Adenocarcinoma | RMND1 | 0.05 | 0.06 | lasso | 2 | 0.07 | 4.3e-08 | 6.1 | -5.8 | 7.0e-09 | -0.04 | 0.00 | 1.00 | TRUE |
12 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | RMND1 | 0.16 | 0.15 | enet | 7 | 0.09 | 2.7e-03 | 6.1 | -5.3 | 8.7e-08 | -0.04 | 0.00 | 0.95 | FALSE |
13 | The Cancer Genome Atlas | Stomach Adenocarcinoma | RMND1 | 0.06 | 0.04 | blup | 57 | 0.06 | 4.9e-05 | 4.2 | -5.7 | 9.8e-09 | -0.03 | 0.03 | 0.88 | FALSE |