Best TWAS P=7.89e-19 · Best GWAS P=4.37e-24 conditioned to 6.08e-08
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | LIN7C | 0.08 | 0.06 | lasso | 1 | 0.04 | 4.1e-04 | 8.47 | 8.5 | 2.5e-17 | 0.63 | 0.74 | 0.14 | FALSE |
2 | GTEx | Brain Putamen basal ganglia | BDNF-AS | 0.22 | 0.17 | lasso | 4 | 0.13 | 5.5e-04 | -3.98 | 5.1 | 3.0e-07 | 0.33 | 0.23 | 0.06 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | LIN7C | 0.26 | 0.22 | lasso | 6 | 0.25 | 1.4e-18 | 8.47 | 7.4 | 1.8e-13 | 0.62 | 1.00 | 0.00 | FALSE |
4 | GTEx | Esophagus Muscularis | LIN7C | 0.14 | 0.08 | enet | 11 | 0.07 | 5.4e-05 | 3.89 | 6.5 | 1.1e-10 | 0.60 | 0.68 | 0.18 | FALSE |
5 | GTEx | Liver | METTL15 | 0.18 | 0.05 | lasso | 3 | 0.09 | 1.9e-03 | -0.19 | -6.3 | 2.1e-10 | -0.68 | 0.02 | 0.82 | FALSE |
6 | GTEx | Nerve Tibial | LIN7C | 0.18 | 0.08 | enet | 27 | 0.12 | 4.2e-09 | 8.47 | 5.7 | 9.8e-09 | 0.56 | 0.62 | 0.35 | FALSE |
7 | GTEx | Thyroid | LIN7C | 0.08 | 0.04 | lasso | 4 | 0.04 | 6.0e-04 | 8.47 | 8.4 | 3.9e-17 | 0.69 | 0.53 | 0.35 | FALSE |
8 | NTR | Blood | LIN7C | 0.01 | 0.00 | lasso | 3 | 0.01 | 2.2e-03 | 9.15 | -8.9 | 7.9e-19 | -0.72 | 0.09 | 0.83 | TRUE |
9 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | LIN7C | 0.04 | 0.01 | lasso | 3 | 0.02 | 1.0e-02 | -2.19 | 5.5 | 3.1e-08 | 0.46 | 0.02 | 0.85 | FALSE |
10 | The Cancer Genome Atlas | Colon Adenocarcinoma | LIN7C | 0.10 | 0.03 | blup | 32 | 0.08 | 2.8e-05 | 8.71 | 6.4 | 1.5e-10 | 0.57 | 0.01 | 0.95 | FALSE |
11 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LIN7C | 0.05 | 0.02 | lasso | 3 | 0.03 | 2.9e-04 | 8.81 | 8.2 | 2.1e-16 | 0.63 | 0.00 | 0.99 | FALSE |
12 | The Cancer Genome Atlas | Brain Lower Grade Glioma | LIN7C | 0.09 | 0.12 | lasso | 2 | 0.12 | 2.6e-13 | 3.77 | 5.5 | 3.8e-08 | 0.52 | 0.94 | 0.06 | FALSE |