Best TWAS P=1.74e-09 · Best GWAS P=7.27e-07 conditioned to 0.306
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Breast Mammary Tissue | SLC51A | 0.28 | 0.06 | lasso | 6 | 0.14 | 1.3e-07 | 3.8 | -6.0 | 1.7e-09 | 0.70 | 0.01 | 0.96 | TRUE |
| 2 | GTEx | Breast Mammary Tissue | UBXN7 | 0.20 | 0.00 | enet | 16 | 0.02 | 3.5e-02 | -3.9 | -5.2 | 2.3e-07 | 0.60 | 0.03 | 0.73 | FALSE |
| 3 | GTEx | Cells Transformed fibroblasts | SLC51A | 0.30 | 0.22 | lasso | 4 | 0.24 | 5.0e-18 | 3.8 | -5.3 | 1.0e-07 | 0.45 | 0.22 | 0.49 | FALSE |
| 4 | GTEx | Heart Atrial Appendage | SLC51A | 0.27 | 0.11 | lasso | 4 | 0.15 | 2.9e-07 | 3.8 | -5.2 | 1.6e-07 | 0.73 | 0.02 | 0.95 | FALSE |
| 5 | GTEx | Nerve Tibial | SLC51A | 0.26 | 0.12 | lasso | 7 | 0.22 | 1.9e-15 | 3.8 | -5.2 | 2.5e-07 | 0.72 | 0.04 | 0.91 | FALSE |
| 6 | GTEx | Stomach | SLC51A | 0.13 | 0.06 | enet | 12 | 0.03 | 1.9e-02 | 4.5 | -5.3 | 9.4e-08 | 0.62 | 0.01 | 0.90 | FALSE |
| 7 | The Cancer Genome Atlas | Soft Tissue Sarcoma | PCYT1A | 0.12 | 0.05 | blup | 68 | 0.06 | 2.0e-04 | 4.6 | -5.8 | 7.2e-09 | 0.40 | 0.01 | 0.79 | FALSE |