Best TWAS P=5.52e-25 · Best GWAS P=4.41e-28 conditioned to 7.65e-06
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | PPA2 | 0.08 | 0.03 | bslmm | 429 | 0.04 | 2.2e-05 | -6.9 | -7.5 | 6.2e-14 | 0.61 | 0.06 | 0.91 | FALSE |
2 | GTEx | Artery Aorta | PPA2 | 0.11 | -0.01 | enet | 24 | 0.01 | 1.6e-01 | -10.6 | -7.7 | 1.2e-14 | 0.58 | 0.06 | 0.45 | FALSE |
3 | GTEx | Brain Cerebellum | PPA2 | 0.22 | 0.01 | lasso | 4 | 0.03 | 3.7e-02 | -7.5 | -6.0 | 2.3e-09 | 0.55 | 0.09 | 0.15 | FALSE |
4 | GTEx | Brain Cortex | PPA2 | 0.14 | 0.09 | lasso | 9 | 0.09 | 1.6e-03 | -8.8 | -8.9 | 4.5e-19 | 0.79 | 0.05 | 0.61 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | PPA2 | 0.11 | 0.03 | lasso | 3 | 0.01 | 6.5e-02 | -7.1 | -7.6 | 2.9e-14 | 0.59 | 0.40 | 0.14 | FALSE |
6 | GTEx | Esophagus Gastroesophageal Junction | PPA2 | 0.29 | 0.15 | lasso | 5 | 0.14 | 8.8e-06 | -10.6 | -10.3 | 5.5e-25 | 0.81 | 0.04 | 0.94 | TRUE |
7 | GTEx | Esophagus Mucosa | PPA2 | 0.18 | 0.06 | enet | 14 | 0.12 | 2.5e-08 | 7.9 | -8.9 | 3.6e-19 | 0.68 | 0.05 | 0.94 | FALSE |
8 | GTEx | Heart Atrial Appendage | PPA2 | 0.15 | 0.05 | lasso | 7 | 0.06 | 7.4e-04 | -9.0 | -7.0 | 2.4e-12 | 0.70 | 0.23 | 0.40 | FALSE |
9 | GTEx | Muscle Skeletal | PPA2 | 0.19 | 0.06 | enet | 28 | 0.11 | 8.7e-11 | -8.8 | -6.2 | 6.6e-10 | 0.67 | 0.76 | 0.24 | FALSE |
10 | GTEx | Nerve Tibial | PPA2 | 0.13 | 0.07 | enet | 23 | 0.07 | 2.1e-05 | -7.5 | -7.2 | 6.3e-13 | 0.63 | 0.44 | 0.33 | FALSE |
11 | GTEx | Ovary | PPA2 | 0.18 | 0.10 | lasso | 3 | 0.14 | 2.2e-04 | -7.5 | -8.6 | 6.7e-18 | 0.72 | 0.06 | 0.69 | FALSE |
12 | GTEx | Skin Sun Exposed Lower leg | TET2 | 0.09 | 0.01 | enet | 18 | 0.02 | 3.6e-03 | -10.9 | -7.0 | 2.2e-12 | 0.58 | 0.02 | 0.90 | FALSE |
13 | GTEx | Thyroid | PPA2 | 0.22 | 0.01 | enet | 18 | 0.12 | 2.9e-09 | 5.6 | -5.5 | 3.7e-08 | 0.50 | 0.73 | 0.09 | FALSE |
14 | YFS | Blood | PPA2 | 0.22 | 0.05 | lasso | 19 | 0.12 | 9.7e-38 | -3.1 | 5.3 | 9.7e-08 | -0.40 | 1.00 | 0.00 | FALSE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | PPA2 | 0.04 | 0.02 | blup | 84 | 0.04 | 6.1e-05 | -8.8 | -8.1 | 6.8e-16 | 0.74 | 0.14 | 0.65 | FALSE |