Best TWAS P=1.86e-11 · Best GWAS P=1.29e-12 conditioned to 0.0592
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Artery Aorta | RP11-529H20.6 | 0.20 | 0.14 | lasso | 4 | 0.18 | 6.4e-10 | -4.6 | -5.2 | 1.9e-07 | 0.05 | 0.05 | 0.92 | TRUE |
| 2 | GTEx | Cells Transformed fibroblasts | BTBD7 | 0.16 | 0.01 | lasso | 8 | 0.04 | 3.6e-04 | -6.0 | 5.8 | 5.6e-09 | -0.02 | 0.13 | 0.85 | FALSE |
| 3 | GTEx | Cells Transformed fibroblasts | RPS6KA5 | 0.08 | 0.07 | lasso | 2 | 0.06 | 5.3e-05 | -6.5 | 6.7 | 1.9e-11 | -0.89 | 0.05 | 0.93 | TRUE |
| 4 | GTEx | Colon Sigmoid | RPS6KA5 | 0.16 | 0.09 | lasso | 5 | 0.08 | 7.1e-04 | -5.3 | -5.4 | 7.4e-08 | 0.81 | 0.04 | 0.89 | FALSE |
| 5 | GTEx | Spleen | C14orf159 | 0.30 | 0.21 | lasso | 5 | 0.21 | 3.6e-06 | -5.8 | 6.7 | 2.3e-11 | -0.81 | 0.07 | 0.45 | FALSE |
| 6 | METSIM | Adipose | C14orf159 | 0.04 | 0.00 | blup | 464 | 0.01 | 4.0e-03 | -5.2 | 5.3 | 1.4e-07 | -0.70 | 0.06 | 0.79 | FALSE |
| 7 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | BTBD7 | 0.02 | 0.01 | blup | 72 | 0.02 | 6.8e-03 | -5.7 | 5.2 | 1.6e-07 | -0.01 | 0.01 | 0.87 | FALSE |
| 8 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BTBD7 | 0.11 | 0.03 | blup | 72 | 0.02 | 8.0e-02 | -6.0 | 5.9 | 3.1e-09 | -0.01 | 0.02 | 0.81 | TRUE |