Best TWAS P=4.07e-14 · Best GWAS P=9.54e-11 conditioned to 0.71
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | NTAN1 | 0.05 | 0.03 | lasso | 2 | 0.04 | 6.7e-04 | -6.5 | 7.0 | 3.7e-12 | -0.97 | 0.01 | 0.97 | FALSE |
2 | GTEx | Artery Tibial | RRN3 | 0.11 | 0.06 | lasso | 2 | 0.07 | 2.0e-06 | 5.9 | 5.6 | 2.3e-08 | -0.53 | 0.24 | 0.75 | FALSE |
3 | GTEx | Cells EBV-transformed lymphocytes | RRN3 | 0.36 | 0.14 | lasso | 5 | 0.20 | 4.5e-07 | 5.9 | 6.1 | 1.1e-09 | -0.65 | 0.13 | 0.85 | FALSE |
4 | GTEx | Cells EBV-transformed lymphocytes | RP11-958N24.1 | 0.22 | 0.02 | lasso | 5 | 0.06 | 4.8e-03 | -2.8 | 5.5 | 4.5e-08 | -0.63 | 0.02 | 0.37 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | RRN3 | 0.10 | 0.12 | enet | 13 | 0.13 | 6.3e-10 | 5.9 | 6.5 | 8.6e-11 | -0.62 | 0.26 | 0.74 | FALSE |
6 | GTEx | Colon Transverse | RRN3 | 0.13 | 0.00 | lasso | 5 | 0.00 | 1.9e-01 | 5.6 | -5.7 | 1.5e-08 | 0.34 | 0.02 | 0.32 | FALSE |
7 | GTEx | Esophagus Mucosa | RRN3 | 0.13 | 0.13 | lasso | 4 | 0.13 | 3.2e-09 | 5.6 | 5.4 | 5.5e-08 | -0.55 | 0.29 | 0.71 | FALSE |
8 | GTEx | Heart Atrial Appendage | NOMO1 | 0.19 | 0.12 | lasso | 6 | 0.10 | 3.7e-05 | 5.6 | 5.7 | 1.5e-08 | -0.52 | 0.17 | 0.45 | FALSE |
9 | GTEx | Heart Atrial Appendage | NTAN1 | 0.10 | 0.09 | lasso | 1 | 0.07 | 3.7e-04 | 5.6 | 5.7 | 1.6e-08 | -0.53 | 0.04 | 0.48 | FALSE |
10 | GTEx | Heart Left Ventricle | RRN3 | 0.24 | 0.12 | lasso | 7 | 0.17 | 2.2e-09 | 5.6 | -6.6 | 4.3e-11 | 0.44 | 0.27 | 0.68 | FALSE |
11 | GTEx | Heart Left Ventricle | NTAN1 | 0.09 | 0.04 | lasso | 3 | 0.02 | 2.0e-02 | 5.9 | 5.8 | 7.1e-09 | -0.52 | 0.02 | 0.72 | FALSE |
12 | GTEx | Muscle Skeletal | RRN3 | 0.18 | 0.03 | enet | 17 | 0.11 | 5.7e-11 | 4.3 | -6.0 | 1.6e-09 | 0.39 | 0.17 | 0.70 | FALSE |
13 | GTEx | Muscle Skeletal | NTAN1 | 0.12 | 0.07 | lasso | 6 | 0.09 | 1.4e-09 | 5.6 | 6.2 | 8.0e-10 | -0.49 | 0.29 | 0.70 | FALSE |
14 | GTEx | Nerve Tibial | NTAN1 | 0.07 | 0.00 | enet | 14 | 0.00 | 1.7e-01 | 5.9 | 6.5 | 9.0e-11 | -0.21 | 0.02 | 0.19 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | RRN3 | 0.10 | 0.12 | lasso | 1 | 0.11 | 4.5e-09 | 5.9 | 5.8 | 4.8e-09 | -0.52 | 0.24 | 0.76 | FALSE |
16 | GTEx | Testis | RRN3 | 0.10 | 0.10 | lasso | 2 | 0.07 | 3.9e-04 | 5.9 | 5.8 | 4.8e-09 | -0.53 | 0.09 | 0.32 | FALSE |
17 | METSIM | Adipose | NTAN1 | 0.07 | 0.06 | enet | 12 | 0.06 | 1.7e-09 | 5.9 | 5.3 | 9.8e-08 | -0.47 | 0.29 | 0.71 | FALSE |
18 | NTR | Blood | NTAN1 | 0.01 | 0.00 | bslmm | 110 | 0.00 | 4.2e-02 | 5.9 | 6.4 | 1.5e-10 | -0.25 | 0.02 | 0.05 | FALSE |
19 | NTR | Blood | PDXDC1 | 0.12 | 0.12 | enet | 26 | 0.15 | 1.3e-46 | -6.4 | 7.6 | 4.1e-14 | -0.88 | 0.01 | 0.99 | TRUE |
20 | ROSMAP | Brain Pre-frontal Cortex | NTAN1 | 0.12 | 0.10 | lasso | 3 | 0.11 | 1.4e-13 | 5.6 | 5.8 | 6.9e-09 | -0.52 | 0.33 | 0.67 | FALSE |