Best TWAS P=1.48e-22 · Best GWAS P=1.31e-21 conditioned to 0.0255
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Pituitary | LHFPL2 | 0.38 | 0.02 | lasso | 9 | 0.04 | 4.0e-02 | 0.71 | -5.2 | 2.2e-07 | 0.51 | 0.04 | 0.48 | FALSE |
| 2 | GTEx | Testis | LHFPL2 | 0.18 | -0.01 | enet | 21 | 0.10 | 2.1e-05 | 3.91 | 5.7 | 1.5e-08 | -0.25 | 0.11 | 0.14 | FALSE |
| 3 | METSIM | Adipose | AP3B1 | 0.07 | 0.01 | blup | 556 | 0.02 | 2.4e-04 | 4.60 | -6.9 | 6.2e-12 | 0.53 | 0.10 | 0.78 | FALSE |
| 4 | YFS | Blood | AP3B1 | 0.25 | 0.22 | lasso | 9 | 0.23 | 2.6e-74 | 6.48 | -6.6 | 3.4e-11 | 0.31 | 1.00 | 0.00 | FALSE |
| 5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AP3B1 | 0.02 | 0.00 | blup | 126 | 0.01 | 1.8e-02 | -9.53 | -9.8 | 1.5e-22 | 0.86 | 0.02 | 0.90 | TRUE |
| 6 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | AP3B1 | 0.16 | 0.06 | enet | 18 | 0.09 | 2.2e-05 | 7.13 | -7.3 | 2.2e-13 | 0.53 | 0.04 | 0.53 | FALSE |
| 7 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | AP3B1 | 0.08 | 0.01 | enet | 20 | 0.02 | 9.7e-04 | -9.20 | -6.8 | 7.6e-12 | 0.58 | 0.02 | 0.81 | FALSE |
| 8 | The Cancer Genome Atlas | Lung Adenocarcinoma | AP3B1 | 0.05 | 0.03 | lasso | 3 | 0.04 | 4.4e-05 | 7.13 | -6.8 | 1.4e-11 | 0.36 | 0.42 | 0.26 | FALSE |
| 9 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AP3B1 | 0.05 | 0.02 | blup | 126 | 0.03 | 5.0e-04 | 7.30 | -9.3 | 9.2e-21 | 0.80 | 0.02 | 0.91 | FALSE |
| 10 | The Cancer Genome Atlas | Thyroid Carcinoma | AP3B1 | 0.11 | 0.06 | lasso | 2 | 0.05 | 1.3e-05 | 6.48 | -6.0 | 1.7e-09 | 0.20 | 0.59 | 0.06 | FALSE |