Best TWAS P=9.38e-27 · Best GWAS P=1.32e-26 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | BTBD7 | 0.04 | 0.04 | lasso | 2 | 0.03 | 1.8e-04 | 5.8 | -6.0 | 2.1e-09 | -0.05 | 0.56 | 0.40 | FALSE |
2 | GTEx | Cells Transformed fibroblasts | BTBD7 | 0.16 | 0.01 | lasso | 8 | 0.04 | 3.6e-04 | 6.3 | -5.7 | 1.0e-08 | -0.02 | 0.06 | 0.92 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | RPS6KA5 | 0.08 | 0.07 | lasso | 2 | 0.06 | 5.3e-05 | 7.5 | -7.8 | 7.8e-15 | 0.00 | 0.01 | 0.98 | FALSE |
4 | GTEx | Colon Sigmoid | RIN3 | 0.24 | 0.17 | lasso | 6 | 0.11 | 9.3e-05 | -10.7 | 10.7 | 9.4e-27 | -1.00 | 0.00 | 1.00 | TRUE |
5 | GTEx | Colon Sigmoid | RPS6KA5 | 0.16 | 0.09 | lasso | 5 | 0.08 | 7.1e-04 | 7.6 | 7.7 | 1.9e-14 | -0.02 | 0.04 | 0.89 | FALSE |
6 | GTEx | Esophagus Muscularis | RIN3 | 0.17 | 0.05 | lasso | 6 | 0.06 | 1.6e-04 | -8.1 | 7.4 | 1.2e-13 | -0.47 | 0.04 | 0.83 | FALSE |
7 | GTEx | Heart Atrial Appendage | C14orf159 | 0.18 | 0.10 | lasso | 4 | 0.06 | 1.6e-03 | 5.0 | 5.6 | 2.8e-08 | -0.03 | 0.11 | 0.69 | FALSE |
8 | GTEx | Heart Left Ventricle | RPS6KA5 | 0.13 | 0.00 | enet | 38 | 0.02 | 2.2e-02 | 5.1 | 6.4 | 2.0e-10 | -0.06 | 0.04 | 0.69 | FALSE |
9 | GTEx | Spleen | C14orf159 | 0.30 | 0.21 | lasso | 5 | 0.21 | 3.6e-06 | 6.7 | -7.9 | 2.5e-15 | 0.03 | 0.10 | 0.28 | TRUE |
10 | GTEx | Testis | BTBD7 | 0.19 | 0.00 | enet | 45 | 0.01 | 9.5e-02 | 5.6 | -5.5 | 3.9e-08 | -0.03 | 0.09 | 0.74 | FALSE |
11 | METSIM | Adipose | C14orf159 | 0.04 | 0.00 | blup | 464 | 0.01 | 4.0e-03 | 5.2 | -6.5 | 6.4e-11 | 0.01 | 0.08 | 0.75 | FALSE |
12 | NTR | Blood | BTBD7 | 0.02 | 0.03 | lasso | 2 | 0.02 | 6.1e-08 | 5.8 | -6.0 | 1.7e-09 | -0.03 | 0.69 | 0.31 | TRUE |
13 | YFS | Blood | RPS6KA5 | 0.11 | 0.03 | enet | 59 | 0.07 | 4.0e-21 | 5.1 | 5.5 | 3.5e-08 | -0.03 | 0.97 | 0.03 | FALSE |
14 | The Cancer Genome Atlas | Lung Adenocarcinoma | RIN3 | 0.05 | 0.00 | blup | 163 | 0.01 | 6.0e-02 | 3.4 | 5.8 | 6.7e-09 | -0.12 | 0.03 | 0.04 | TRUE |
15 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | BTBD7 | 0.02 | 0.01 | blup | 72 | 0.02 | 6.8e-03 | 6.6 | -6.2 | 6.5e-10 | 0.01 | 0.01 | 0.91 | TRUE |
16 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BTBD7 | 0.11 | 0.03 | blup | 72 | 0.02 | 8.0e-02 | 6.3 | -6.1 | 8.8e-10 | -0.04 | 0.03 | 0.63 | FALSE |