Best TWAS P=9.88e-12 · Best GWAS P=5.42e-11 conditioned to 0.00235
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | MARK3 | 0.12 | 0.05 | lasso | 3 | 0.06 | 2.5e-05 | 5.9 | 5.9 | 4.2e-09 | 0.69 | 0.09 | 0.90 | FALSE |
2 | GTEx | Adipose Visceral Omentum | KLC1 | 0.06 | 0.02 | lasso | 2 | 0.00 | 2.2e-01 | 6.1 | -6.5 | 1.0e-10 | -0.57 | 0.10 | 0.38 | FALSE |
3 | GTEx | Adrenal Gland | KLC1 | 0.15 | 0.03 | lasso | 3 | 0.06 | 4.6e-03 | -4.7 | -6.0 | 1.6e-09 | -0.52 | 0.11 | 0.34 | FALSE |
4 | GTEx | Artery Aorta | KLC1 | 0.10 | 0.14 | lasso | 3 | 0.14 | 6.1e-08 | 6.0 | -6.3 | 2.9e-10 | -0.59 | 0.08 | 0.92 | FALSE |
5 | GTEx | Artery Tibial | ZFYVE21 | 0.11 | 0.09 | lasso | 1 | 0.08 | 8.0e-07 | 5.9 | -5.9 | 3.4e-09 | -0.60 | 0.10 | 0.90 | FALSE |
6 | GTEx | Artery Tibial | KLC1 | 0.11 | 0.08 | lasso | 3 | 0.08 | 1.1e-06 | 6.1 | -5.9 | 2.8e-09 | -0.61 | 0.09 | 0.90 | FALSE |
7 | GTEx | Artery Tibial | TRMT61A | 0.07 | 0.07 | lasso | 3 | 0.06 | 2.4e-05 | 5.8 | 6.5 | 9.4e-11 | 0.84 | 0.02 | 0.98 | FALSE |
8 | GTEx | Breast Mammary Tissue | MARK3 | 0.12 | 0.11 | lasso | 2 | 0.08 | 3.9e-05 | 6.0 | 6.0 | 1.9e-09 | 0.69 | 0.07 | 0.89 | FALSE |
9 | GTEx | Breast Mammary Tissue | KLC1 | 0.12 | 0.02 | enet | 26 | 0.07 | 2.9e-04 | -4.7 | -5.6 | 2.5e-08 | -0.41 | 0.76 | 0.15 | FALSE |
10 | GTEx | Breast Mammary Tissue (Male) | MARK3 | 0.08 | 0.00 | enet | 9 | -0.01 | 7.2e-01 | 6.0 | 6.7 | 2.0e-11 | 0.66 | 0.03 | 0.37 | FALSE |
11 | GTEx | Cells Transformed fibroblasts | ZFYVE21 | 0.10 | 0.03 | lasso | 4 | 0.11 | 1.1e-08 | 5.1 | -5.4 | 5.5e-08 | -0.56 | 0.23 | 0.60 | FALSE |
12 | GTEx | Cells Transformed fibroblasts | KLC1 | 0.16 | 0.11 | enet | 17 | 0.10 | 3.1e-08 | -4.2 | -5.3 | 9.7e-08 | -0.43 | 0.94 | 0.05 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | APOPT1 | 0.14 | 0.12 | lasso | 3 | 0.10 | 6.4e-08 | 5.9 | 6.3 | 3.2e-10 | 0.57 | 0.10 | 0.90 | FALSE |
14 | GTEx | Esophagus Mucosa | KLC1 | 0.17 | 0.09 | lasso | 5 | 0.12 | 1.6e-08 | -4.7 | -5.4 | 6.7e-08 | -0.42 | 0.92 | 0.06 | FALSE |
15 | GTEx | Esophagus Muscularis | ZFYVE21 | 0.11 | 0.06 | lasso | 5 | 0.05 | 5.7e-04 | 5.7 | -5.8 | 5.9e-09 | -0.61 | 0.14 | 0.77 | FALSE |
16 | GTEx | Esophagus Muscularis | KLC1 | 0.07 | 0.01 | enet | 10 | 0.02 | 2.6e-02 | 6.0 | -6.1 | 1.2e-09 | -0.58 | 0.07 | 0.66 | FALSE |
17 | GTEx | Lung | MARK3 | 0.06 | 0.02 | lasso | 3 | 0.01 | 6.6e-02 | 6.0 | 6.5 | 6.6e-11 | 0.77 | 0.04 | 0.91 | FALSE |
18 | GTEx | Lung | CKB | 0.07 | 0.01 | lasso | 2 | 0.01 | 3.4e-02 | 6.1 | 6.5 | 7.7e-11 | 0.71 | 0.05 | 0.85 | FALSE |
19 | GTEx | Muscle Skeletal | ZFYVE21 | 0.10 | 0.05 | lasso | 2 | 0.03 | 3.3e-04 | 5.9 | -5.6 | 2.8e-08 | -0.56 | 0.10 | 0.85 | FALSE |
20 | GTEx | Muscle Skeletal | KLC1 | 0.11 | 0.07 | lasso | 7 | 0.08 | 3.3e-08 | 6.0 | -5.7 | 9.0e-09 | -0.55 | 0.09 | 0.91 | FALSE |
21 | GTEx | Muscle Skeletal | APOPT1 | 0.14 | 0.21 | enet | 10 | 0.22 | 6.7e-21 | 5.7 | -5.9 | 3.3e-09 | -0.62 | 0.30 | 0.70 | FALSE |
22 | GTEx | Pituitary | MARK3 | 0.21 | 0.27 | enet | 8 | 0.25 | 4.9e-07 | 6.0 | 6.3 | 3.1e-10 | 0.70 | 0.06 | 0.89 | FALSE |
23 | GTEx | Prostate | MARK3 | 0.18 | 0.22 | enet | 11 | 0.20 | 8.0e-06 | 6.0 | 6.0 | 2.6e-09 | 0.69 | 0.08 | 0.85 | FALSE |
24 | GTEx | Skin Not Sun Exposed Suprapubic | MARK3 | 0.16 | 0.10 | lasso | 3 | 0.10 | 6.7e-06 | 6.1 | 6.2 | 6.5e-10 | 0.67 | 0.06 | 0.94 | FALSE |
25 | GTEx | Skin Not Sun Exposed Suprapubic | XRCC3 | 0.14 | 0.03 | lasso | 14 | 0.03 | 1.3e-02 | -4.7 | -5.2 | 2.5e-07 | -0.37 | 0.61 | 0.24 | FALSE |
26 | GTEx | Skin Not Sun Exposed Suprapubic | CKB | 0.28 | 0.26 | lasso | 4 | 0.25 | 6.4e-14 | 6.5 | 6.6 | 4.6e-11 | 0.98 | 0.00 | 1.00 | FALSE |
27 | GTEx | Skin Sun Exposed Lower leg | MARK3 | 0.10 | 0.09 | enet | 13 | 0.08 | 7.5e-07 | 5.9 | 5.9 | 3.5e-09 | 0.76 | 0.08 | 0.92 | FALSE |
28 | GTEx | Skin Sun Exposed Lower leg | CKB | 0.43 | 0.32 | enet | 16 | 0.34 | 5.9e-29 | 6.5 | 6.4 | 1.3e-10 | 0.96 | 0.00 | 1.00 | FALSE |
29 | GTEx | Stomach | MARK3 | 0.10 | 0.09 | lasso | 2 | 0.04 | 4.5e-03 | 6.0 | 6.0 | 2.7e-09 | 0.68 | 0.08 | 0.76 | FALSE |
30 | GTEx | Stomach | TRMT61A | 0.12 | 0.11 | lasso | 5 | 0.08 | 1.2e-04 | 6.0 | 6.0 | 1.9e-09 | 0.69 | 0.07 | 0.88 | FALSE |
31 | GTEx | Testis | ZFYVE21 | 0.11 | 0.14 | lasso | 2 | 0.11 | 1.4e-05 | 5.9 | -5.9 | 2.9e-09 | -0.60 | 0.09 | 0.85 | FALSE |
32 | GTEx | Thyroid | MARK3 | 0.38 | 0.48 | lasso | 4 | 0.48 | 2.8e-41 | 6.0 | 6.0 | 2.1e-09 | 0.69 | 0.08 | 0.92 | FALSE |
33 | NTR | Blood | BAG5 | 0.02 | 0.00 | lasso | 5 | 0.01 | 6.3e-03 | 5.7 | -5.8 | 8.6e-09 | -0.64 | 0.19 | 0.60 | FALSE |
34 | YFS | Blood | KLC1 | 0.01 | 0.01 | blup | 389 | 0.01 | 1.0e-03 | 5.4 | -6.8 | 9.9e-12 | -0.61 | 0.11 | 0.70 | TRUE |
35 | The Cancer Genome Atlas | Breast Invasive Carcinoma | C14orf153 | 0.05 | 0.02 | lasso | 4 | 0.02 | 8.0e-05 | 5.7 | 5.8 | 5.3e-09 | 0.64 | 0.01 | 0.98 | FALSE |
36 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CKB | 0.06 | 0.03 | lasso | 3 | 0.03 | 2.5e-06 | 6.6 | 6.6 | 4.9e-11 | 0.98 | 0.00 | 1.00 | FALSE |
37 | The Cancer Genome Atlas | Colon Adenocarcinoma | C14orf153 | 0.07 | 0.05 | lasso | 4 | 0.04 | 1.5e-03 | 5.7 | 5.6 | 1.9e-08 | 0.61 | 0.01 | 0.84 | FALSE |
38 | The Cancer Genome Atlas | Glioblastoma Multiforme | C14orf153 | 0.14 | 0.01 | blup | 40 | 0.03 | 3.5e-02 | 5.7 | 5.9 | 2.9e-09 | 0.73 | 0.01 | 0.53 | FALSE |
39 | The Cancer Genome Atlas | Glioblastoma Multiforme | MARK3 | 0.12 | 0.05 | blup | 64 | 0.07 | 3.3e-03 | 6.1 | 5.2 | 1.8e-07 | 0.58 | 0.02 | 0.27 | FALSE |
40 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MARK3 | 0.07 | 0.03 | blup | 64 | 0.06 | 5.5e-07 | 6.5 | 5.9 | 2.7e-09 | 0.85 | 0.01 | 0.99 | FALSE |
41 | The Cancer Genome Atlas | Lung Adenocarcinoma | C14orf153 | 0.06 | 0.02 | blup | 38 | 0.04 | 2.4e-05 | 5.7 | 5.7 | 1.3e-08 | 0.54 | 0.02 | 0.92 | FALSE |
42 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CKB | 0.03 | 0.00 | blup | 34 | 0.02 | 1.4e-03 | -2.8 | 5.4 | 6.9e-08 | 0.69 | 0.01 | 0.81 | FALSE |
43 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TRMT61A | 0.02 | 0.00 | blup | 34 | 0.01 | 6.2e-02 | -3.3 | 5.5 | 3.2e-08 | 0.62 | 0.02 | 0.39 | FALSE |
44 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | BAG5 | 0.08 | 0.09 | lasso | 2 | 0.08 | 3.7e-04 | 6.0 | 6.0 | 2.3e-09 | 0.69 | 0.00 | 0.96 | FALSE |
45 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | C14orf153 | 0.11 | 0.11 | lasso | 3 | 0.10 | 1.1e-04 | 5.7 | 5.6 | 2.1e-08 | 0.60 | 0.01 | 0.95 | FALSE |
46 | The Cancer Genome Atlas | Prostate Adenocarcinoma | C14orf153 | 0.09 | 0.08 | blup | 38 | 0.09 | 6.2e-10 | 5.7 | 6.2 | 4.7e-10 | 0.64 | 0.01 | 0.99 | FALSE |
47 | The Cancer Genome Atlas | Prostate Adenocarcinoma | MARK3 | 0.07 | 0.06 | enet | 7 | 0.08 | 1.0e-08 | 6.6 | 6.8 | 1.0e-11 | 0.95 | 0.00 | 1.00 | FALSE |
48 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TRMT61A | 0.03 | 0.01 | blup | 32 | 0.01 | 1.4e-02 | 5.8 | 5.2 | 2.3e-07 | 0.50 | 0.01 | 0.19 | FALSE |
49 | The Cancer Genome Atlas | Rectum Adenocarcinoma | BAG5 | 0.17 | -0.01 | blup | 32 | 0.02 | 1.3e-01 | -2.9 | 5.4 | 6.0e-08 | 0.62 | 0.01 | 0.46 | FALSE |
50 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | C14orf153 | 0.20 | 0.07 | blup | 38 | 0.07 | 1.5e-03 | -3.4 | 5.7 | 1.5e-08 | 0.61 | 0.02 | 0.42 | FALSE |
51 | The Cancer Genome Atlas | Thyroid Carcinoma | MARK3 | 0.10 | 0.03 | blup | 61 | 0.03 | 4.0e-04 | 6.5 | 6.2 | 4.6e-10 | 0.74 | 0.01 | 0.75 | FALSE |