Best TWAS P=2.95e-09 · Best GWAS P=2.52e-08 conditioned to 0.487
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | ADORA2B | 0.06 | 0.07 | blup | 304 | 0.07 | 5.0e-09 | 4.7 | 5.4 | 6.5e-08 | 0.92 | 0.06 | 0.94 | FALSE |
2 | GTEx | Adipose Subcutaneous | ADORA2B | 0.16 | 0.23 | lasso | 4 | 0.26 | 1.7e-21 | 5.0 | 5.2 | 1.6e-07 | 0.98 | 0.07 | 0.93 | FALSE |
3 | GTEx | Adipose Visceral Omentum | ADORA2B | 0.13 | 0.16 | lasso | 3 | 0.16 | 1.8e-08 | 5.2 | 5.2 | 1.6e-07 | 0.99 | 0.04 | 0.96 | FALSE |
4 | GTEx | Artery Aorta | TTC19 | 0.06 | 0.00 | lasso | 3 | 0.00 | 7.1e-01 | 4.9 | -5.8 | 8.2e-09 | -0.87 | 0.08 | 0.30 | FALSE |
5 | GTEx | Artery Tibial | ADORA2B | 0.23 | 0.42 | lasso | 3 | 0.42 | 1.2e-35 | 5.0 | 5.1 | 2.7e-07 | 0.98 | 0.17 | 0.83 | FALSE |
6 | GTEx | Brain Cerebellar Hemisphere | ADORA2B | 0.16 | 0.00 | lasso | 9 | -0.01 | 5.6e-01 | 5.5 | 5.3 | 1.0e-07 | 0.96 | 0.04 | 0.66 | FALSE |
7 | GTEx | Brain Cerebellum | ZSWIM7 | 0.25 | 0.13 | lasso | 4 | 0.12 | 2.6e-04 | 5.2 | -5.3 | 1.5e-07 | -0.98 | 0.04 | 0.95 | FALSE |
8 | GTEx | Brain Frontal Cortex BA9 | ZSWIM7 | 0.15 | 0.21 | lasso | 3 | 0.20 | 6.3e-06 | 5.5 | 5.4 | 6.3e-08 | 0.99 | 0.04 | 0.95 | FALSE |
9 | GTEx | Brain Hypothalamus | ZSWIM7 | 0.13 | 0.18 | lasso | 2 | 0.14 | 3.8e-04 | 5.5 | 5.3 | 1.1e-07 | 0.99 | 0.04 | 0.86 | FALSE |
10 | GTEx | Breast Mammary Tissue | TTC19 | 0.07 | 0.05 | enet | 6 | 0.05 | 2.0e-03 | 4.8 | -5.1 | 2.8e-07 | -0.98 | 0.09 | 0.87 | FALSE |
11 | GTEx | Breast Mammary Tissue (Male) | TTC19 | 0.13 | 0.08 | lasso | 3 | 0.01 | 1.6e-01 | 5.5 | -5.2 | 2.2e-07 | -0.99 | 0.04 | 0.71 | FALSE |
12 | GTEx | Cells EBV-transformed lymphocytes | TTC19 | 0.15 | 0.05 | lasso | 4 | 0.08 | 1.6e-03 | 5.5 | -5.2 | 2.1e-07 | -0.99 | 0.04 | 0.93 | FALSE |
13 | GTEx | Cells Transformed fibroblasts | ADORA2B | 0.18 | 0.11 | enet | 15 | 0.15 | 2.2e-11 | 2.4 | 5.1 | 2.9e-07 | 0.23 | 0.98 | 0.01 | FALSE |
14 | GTEx | Heart Atrial Appendage | ADORA2B | 0.19 | 0.14 | lasso | 10 | 0.13 | 2.4e-06 | 5.4 | 5.1 | 2.8e-07 | 0.98 | 0.04 | 0.96 | FALSE |
15 | GTEx | Lung | ADORA2B | 0.19 | 0.09 | lasso | 4 | 0.07 | 3.2e-06 | 5.0 | 5.2 | 2.2e-07 | 0.97 | 0.04 | 0.96 | FALSE |
16 | GTEx | Muscle Skeletal | ADORA2B | 0.27 | 0.44 | lasso | 3 | 0.45 | 5.3e-48 | 5.0 | 5.2 | 2.2e-07 | 0.98 | 0.21 | 0.79 | FALSE |
17 | GTEx | Muscle Skeletal | ZSWIM7 | 0.22 | 0.42 | enet | 15 | 0.42 | 9.6e-45 | 5.0 | 5.3 | 1.3e-07 | 0.98 | 0.15 | 0.85 | FALSE |
18 | GTEx | Pancreas | TTC19 | 0.12 | 0.09 | enet | 9 | 0.07 | 8.5e-04 | 5.0 | -5.8 | 7.0e-09 | -0.86 | 0.14 | 0.63 | FALSE |
19 | GTEx | Pancreas | ADORA2B | 0.12 | 0.16 | enet | 9 | 0.14 | 1.5e-06 | 5.5 | 5.4 | 5.1e-08 | 0.99 | 0.03 | 0.96 | FALSE |
20 | GTEx | Skin Not Sun Exposed Suprapubic | ADORA2B | 0.15 | 0.13 | lasso | 3 | 0.12 | 3.8e-07 | 5.6 | 5.5 | 2.9e-08 | 1.00 | 0.02 | 0.97 | FALSE |
21 | GTEx | Skin Sun Exposed Lower leg | ADORA2B | 0.12 | 0.17 | lasso | 4 | 0.17 | 3.1e-14 | 5.5 | 5.4 | 6.6e-08 | 1.00 | 0.03 | 0.97 | FALSE |
22 | GTEx | Spleen | TTC19 | 0.28 | 0.06 | enet | 12 | 0.03 | 7.0e-02 | 5.0 | -5.1 | 3.0e-07 | -0.88 | 0.12 | 0.61 | FALSE |
23 | GTEx | Spleen | ADORA2B | 0.23 | 0.27 | enet | 10 | 0.24 | 7.4e-07 | 5.0 | 5.7 | 1.4e-08 | 0.96 | 0.05 | 0.95 | FALSE |
24 | GTEx | Spleen | ZSWIM7 | 0.37 | 0.39 | lasso | 7 | 0.40 | 2.8e-11 | 5.3 | -5.2 | 1.5e-07 | -0.99 | 0.05 | 0.95 | FALSE |
25 | GTEx | Whole Blood | ADORA2B | 0.08 | 0.00 | lasso | 5 | 0.00 | 2.5e-01 | 4.2 | 5.8 | 8.5e-09 | 0.85 | 0.04 | 0.69 | FALSE |
26 | GTEx | Whole Blood | ZSWIM7 | 0.08 | 0.01 | enet | 22 | 0.01 | 2.4e-02 | 2.5 | 5.1 | 2.7e-07 | 0.30 | 0.06 | 0.16 | FALSE |
27 | METSIM | Adipose | ADORA2B | 0.10 | 0.20 | lasso | 3 | 0.20 | 4.2e-29 | 5.2 | 5.2 | 1.6e-07 | 0.98 | 0.04 | 0.96 | FALSE |
28 | ROSMAP | Brain Pre-frontal Cortex | TTC19 | 0.14 | 0.24 | lasso | 10 | 0.27 | 1.2e-34 | 5.5 | 5.4 | 6.1e-08 | 0.95 | 0.02 | 0.98 | FALSE |
29 | ROSMAP | Brain Pre-frontal Cortex | ADORA2B | 0.09 | 0.11 | lasso | 5 | 0.10 | 5.7e-13 | 5.3 | 5.3 | 1.4e-07 | 0.98 | 0.04 | 0.96 | FALSE |
30 | YFS | Blood | PIGL | 0.02 | 0.02 | blup | 279 | 0.02 | 1.5e-06 | 3.4 | 5.9 | 2.9e-09 | 0.88 | 0.18 | 0.82 | TRUE |
31 | The Cancer Genome Atlas | Breast Invasive Carcinoma | ZSWIM7 | 0.06 | 0.10 | lasso | 2 | 0.09 | 1.4e-17 | 5.3 | 5.3 | 1.3e-07 | 0.99 | 0.01 | 0.99 | FALSE |
32 | The Cancer Genome Atlas | Colon Adenocarcinoma | ZSWIM7 | 0.04 | 0.02 | blup | 44 | 0.03 | 5.0e-03 | 5.5 | 5.1 | 2.7e-07 | 0.99 | 0.02 | 0.78 | FALSE |
33 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | ADORA2B | 0.28 | 0.24 | enet | 14 | 0.27 | 7.3e-16 | 5.0 | 5.8 | 8.2e-09 | 0.95 | 0.02 | 0.98 | FALSE |
34 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NCOR1 | 0.03 | 0.04 | blup | 97 | 0.04 | 8.1e-06 | 5.3 | 5.2 | 2.1e-07 | 0.99 | 0.04 | 0.96 | FALSE |
35 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ZSWIM7 | 0.19 | 0.32 | lasso | 4 | 0.32 | 5.9e-37 | 5.0 | 5.1 | 3.1e-07 | 0.98 | 0.03 | 0.97 | FALSE |
36 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | ADORA2B | 0.13 | 0.17 | blup | 37 | 0.16 | 8.2e-08 | 5.2 | 5.7 | 1.0e-08 | 0.96 | 0.01 | 0.99 | FALSE |
37 | The Cancer Genome Atlas | Lung Adenocarcinoma | ZSWIM7 | 0.05 | 0.05 | blup | 48 | 0.05 | 3.3e-06 | 5.0 | 5.5 | 4.3e-08 | 0.98 | 0.02 | 0.98 | FALSE |
38 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | ADORA2B | 0.10 | 0.07 | enet | 9 | 0.08 | 5.0e-06 | 4.9 | 5.6 | 2.4e-08 | 0.94 | 0.01 | 0.98 | FALSE |
39 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | TTC19 | 0.10 | 0.11 | lasso | 1 | 0.09 | 9.6e-05 | 5.2 | -5.2 | 1.9e-07 | -0.98 | 0.04 | 0.95 | FALSE |
40 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ADORA2B | 0.14 | 0.19 | lasso | 3 | 0.20 | 8.0e-21 | 5.0 | 5.2 | 1.7e-07 | 0.96 | 0.02 | 0.98 | FALSE |
41 | The Cancer Genome Atlas | Prostate Adenocarcinoma | ZSWIM7 | 0.15 | 0.25 | enet | 13 | 0.26 | 2.0e-27 | 5.2 | 5.4 | 7.1e-08 | 0.99 | 0.01 | 0.99 | FALSE |