Best TWAS P=2.41e-08 · Best GWAS P=3.4e-07 conditioned to 0.982
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Esophagus Mucosa | NUCKS1 | 0.12 | 0.11 | enet | 6 | 0.06 | 7.2e-05 | -4.9 | -5.3 | 1.3e-07 | -0.77 | 0.01 | 0.98 | FALSE |
2 | GTEx | Esophagus Muscularis | NUCKS1 | 0.21 | 0.22 | lasso | 5 | 0.20 | 3.6e-12 | 5.1 | -5.3 | 1.3e-07 | -0.98 | 0.01 | 0.99 | FALSE |
3 | GTEx | Heart Atrial Appendage | NUCKS1 | 0.12 | 0.14 | enet | 4 | 0.08 | 1.7e-04 | -4.9 | -5.2 | 1.7e-07 | -0.80 | 0.01 | 0.96 | FALSE |
4 | GTEx | Nerve Tibial | RAB7L1 | 0.35 | 0.14 | enet | 68 | 0.22 | 1.8e-15 | -4.1 | 5.1 | 2.8e-07 | 0.58 | 0.07 | 0.90 | FALSE |
5 | GTEx | Nerve Tibial | SLC41A1 | 0.12 | 0.02 | lasso | 4 | 0.05 | 2.5e-04 | 4.7 | 5.3 | 1.2e-07 | 0.81 | 0.02 | 0.97 | FALSE |
6 | GTEx | Pancreas | NUCKS1 | 0.16 | 0.00 | lasso | 4 | 0.00 | 4.5e-01 | -4.8 | -5.3 | 1.0e-07 | -0.85 | 0.02 | 0.78 | FALSE |
7 | GTEx | Pituitary | NUCKS1 | 0.26 | 0.19 | lasso | 2 | 0.20 | 7.6e-06 | 5.1 | -5.2 | 1.6e-07 | -1.00 | 0.01 | 0.97 | FALSE |
8 | GTEx | Stomach | NUCKS1 | 0.21 | 0.11 | lasso | 8 | 0.15 | 1.1e-07 | 5.1 | -5.6 | 2.4e-08 | -0.92 | 0.01 | 0.99 | TRUE |
9 | GTEx | Testis | NUCKS1 | 0.16 | 0.16 | enet | 15 | 0.16 | 1.3e-07 | 4.7 | -5.2 | 1.7e-07 | -0.89 | 0.01 | 0.98 | FALSE |
10 | GTEx | Thyroid | NUCKS1 | 0.26 | 0.16 | lasso | 6 | 0.19 | 1.8e-14 | 4.8 | -5.2 | 1.6e-07 | -0.92 | 0.01 | 0.98 | FALSE |
11 | METSIM | Adipose | NUCKS1 | 0.05 | 0.02 | lasso | 6 | 0.01 | 4.3e-03 | 4.7 | -5.2 | 1.7e-07 | -0.88 | 0.01 | 0.97 | FALSE |
12 | YFS | Blood | RAB7L1 | 0.06 | 0.07 | lasso | 6 | 0.06 | 1.1e-19 | -4.8 | 5.2 | 2.1e-07 | 0.79 | 0.01 | 0.98 | FALSE |
13 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | RAB7L1 | 0.09 | 0.08 | enet | 11 | 0.08 | 1.7e-09 | -4.8 | 5.1 | 3.0e-07 | 0.74 | 0.01 | 0.98 | FALSE |
14 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | RAB7L1 | 0.09 | 0.04 | blup | 46 | 0.04 | 1.2e-02 | -4.8 | 5.2 | 2.0e-07 | 0.80 | 0.01 | 0.88 | FALSE |
15 | The Cancer Genome Atlas | Thyroid Carcinoma | RAB7L1 | 0.13 | 0.17 | enet | 15 | 0.21 | 3.6e-20 | -4.9 | 5.1 | 2.9e-07 | 0.83 | 0.01 | 0.99 | FALSE |