TWAS
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Traits
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Impedance of leg (left)
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chr19:46,923,752-48,472,705
Best TWAS P=1.08e-17 · Best GWAS P=1.2e-37 conditioned to 3.38e-19
47M
47.2M
47.4M
47.6M
47.8M
48M
48.2M
48.4M
0
10
20
30
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Cells EBV-transformed lymphocytes
SAE1
0.21
0.09
lasso
3
0.07
2.0e-03
6.7
8.6
1.1e-17
0.77
0.06
0.67
TRUE
2
GTEx
Thyroid
CCDC9
0.22
0.09
lasso
4
0.16
3.6e-12
2.0
-6.0
2.2e-09
-0.32
0.98
0.00
TRUE
5
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
GRLF1
0.04
0.04
blup
51
0.03
7.0e-05
-3.4
-5.4
7.9e-08
-0.04
0.47
0.02
TRUE
3
METSIM
Adipose
SAE1
0.12
0.04
lasso
5
0.07
1.7e-10
5.8
8.1
7.6e-16
0.61
0.61
0.39
FALSE
4
YFS
Blood
SAE1
0.07
0.02
enet
18
0.05
3.6e-16
7.8
6.6
3.3e-11
0.56
0.99
0.01
FALSE