Best TWAS P=1.19e-07 · Best GWAS P=1.55e-09 conditioned to 1.09e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | IBSP | 0.03 | 0.01 | blup | 78 | 0.03 | 2.8e-04 | -3.9 | -5.2 | 2.4e-07 | -0.12 | 0.01 | 0.71 | FALSE |
| 2 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | IBSP | 0.16 | 0.05 | blup | 76 | 0.08 | 3.6e-06 | -4.6 | -5.2 | 1.6e-07 | -0.13 | 0.01 | 0.98 | TRUE |
| 3 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | SPP1 | 0.14 | 0.03 | blup | 64 | 0.07 | 1.0e-03 | 4.8 | 5.3 | 1.2e-07 | 0.17 | 0.01 | 0.79 | TRUE |