Best TWAS P=1.08e-07 · Best GWAS P=1.76e-08 conditioned to 0.00876
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | LOC100129961 | 0.17 | 0.14 | enet | 9 | 0.14 | 2.6e-17 | 4.9 | 5.2 | 1.6e-07 | -0.47 | 0.02 | 0.97 | FALSE |
| 2 | NTR | Blood | CCNT2 | 0.01 | 0.00 | blup | 370 | 0.00 | 6.7e-02 | -4.5 | -5.3 | 1.4e-07 | 0.43 | 0.05 | 0.76 | FALSE |
| 3 | YFS | Blood | MCM6 | 0.18 | 0.15 | enet | 20 | 0.20 | 8.5e-64 | -5.3 | -5.2 | 1.9e-07 | 0.64 | 0.01 | 0.99 | FALSE |
| 4 | The Cancer Genome Atlas | Breast Invasive Carcinoma | LCT | 0.02 | 0.02 | enet | 3 | 0.03 | 7.6e-07 | -5.3 | 5.3 | 1.1e-07 | -0.72 | 0.00 | 1.00 | TRUE |
| 5 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | LCT | 0.04 | 0.02 | blup | 36 | 0.02 | 1.9e-03 | -4.4 | 5.3 | 1.4e-07 | -0.71 | 0.01 | 0.96 | FALSE |