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chr5:126,587,995-128,220,643

Best TWAS P=3.66e-37 · Best GWAS P=4.66e-32 conditioned to 0.868

Associated models

#	Study	Tissue	Gene	h2	eQTL R2	model	# weights	model R2	model R2 P	eQTL GWAS Z	TWAS Z	TWAS P	Top SNP corr	PP3	PP4	joint
1	CommonMind	Brain Pre-frontal Cortex	FLJ33630	0.06	0.07	lasso	6	0.07	8.6e-09	5.3	8.0	9.5e-16	-0.52	0.62	0.38	FALSE
2	GTEx	Adipose Subcutaneous	CTC-228N24.3	0.24	0.15	enet	16	0.20	3.4e-16	-11.8	11.5	1.4e-30	-0.97	0.00	1.00	FALSE
3	GTEx	Adipose Visceral Omentum	CTC-228N24.3	0.24	0.16	enet	19	0.16	1.8e-08	-11.8	9.4	6.7e-21	-0.80	0.00	1.00	FALSE
4	GTEx	Adrenal Gland	CTC-228N24.3	0.34	0.10	lasso	9	0.09	4.2e-04	-9.1	10.7	1.1e-26	-0.88	0.03	0.96	FALSE
5	GTEx	Artery Aorta	CTC-228N24.3	0.20	0.04	lasso	8	0.07	7.4e-05	-1.8	10.3	1.2e-24	-0.91	0.11	0.86	FALSE
6	GTEx	Artery Coronary	CTC-228N24.3	0.31	0.10	lasso	3	0.10	2.9e-04	-11.1	9.9	2.7e-23	-0.86	0.01	0.90	FALSE
7	GTEx	Artery Tibial	CTC-228N24.3	0.20	0.16	lasso	7	0.14	3.0e-11	-11.8	11.6	4.5e-31	-0.99	0.00	1.00	FALSE
8	GTEx	Brain Cerebellar Hemisphere	CTC-228N24.3	0.25	0.00	lasso	6	0.05	2.2e-02	-0.4	6.7	2.0e-11	-0.49	0.03	0.62	FALSE
9	GTEx	Brain Cerebellum	CTC-228N24.3	0.31	0.04	lasso	5	0.12	2.9e-04	-11.8	11.0	4.3e-28	-0.84	0.01	0.97	FALSE
10	GTEx	Brain Nucleus accumbens basal ganglia	CTC-228N24.3	0.43	0.13	lasso	6	0.18	1.7e-05	5.2	5.2	1.7e-07	-0.28	0.81	0.03	FALSE
11	GTEx	Cells EBV-transformed lymphocytes	CTC-228N24.3	0.24	-0.01	enet	26	0.04	2.2e-02	-5.5	5.7	9.5e-09	-0.57	0.03	0.70	FALSE
12	GTEx	Cells Transformed fibroblasts	CTC-228N24.3	0.24	0.16	enet	26	0.16	8.6e-12	-11.8	9.6	1.0e-21	-0.89	0.00	1.00	FALSE
13	GTEx	Colon Sigmoid	CTC-228N24.3	0.20	0.22	enet	11	0.23	1.1e-08	-11.1	11.3	1.1e-29	-0.92	0.01	0.99	FALSE
14	GTEx	Esophagus Gastroesophageal Junction	CTC-228N24.3	0.20	0.04	enet	22	0.13	2.1e-05	5.4	9.0	2.4e-19	-0.51	0.05	0.68	TRUE
15	GTEx	Esophagus Mucosa	CTC-228N24.3	0.18	0.14	enet	11	0.14	9.8e-10	-11.8	11.4	7.3e-30	-0.93	0.00	1.00	FALSE
16	GTEx	Esophagus Muscularis	CTC-228N24.3	0.24	0.08	enet	29	0.14	1.4e-08	-11.1	9.8	1.9e-22	-0.75	0.01	0.99	FALSE
17	GTEx	Heart Atrial Appendage	CTC-228N24.3	0.22	0.07	lasso	5	0.07	4.1e-04	-11.0	10.9	7.2e-28	-0.87	0.00	0.99	FALSE
18	GTEx	Heart Left Ventricle	CTC-228N24.3	0.24	0.15	lasso	7	0.19	1.9e-10	-10.9	11.1	7.8e-29	-0.84	0.01	0.99	FALSE
19	GTEx	Lung	CTC-228N24.3	0.18	0.14	enet	16	0.14	3.2e-11	-11.8	11.3	1.3e-29	-0.95	0.00	1.00	FALSE
20	GTEx	Muscle Skeletal	CTC-228N24.3	0.25	0.20	lasso	5	0.21	1.6e-20	-11.8	12.0	4.3e-33	-0.95	0.00	1.00	FALSE
21	GTEx	Nerve Tibial	CTC-228N24.3	0.32	0.18	lasso	10	0.16	1.6e-11	-11.1	10.9	1.2e-27	-0.96	0.01	0.99	FALSE
22	GTEx	Pancreas	CTC-228N24.3	0.14	0.19	lasso	2	0.17	1.1e-07	-11.8	11.8	5.8e-32	-1.00	0.00	1.00	FALSE
23	GTEx	Skin Not Sun Exposed Suprapubic	CTC-228N24.3	0.29	0.21	lasso	7	0.22	1.7e-12	-11.8	11.4	5.0e-30	-0.97	0.00	1.00	FALSE
24	GTEx	Skin Sun Exposed Lower leg	CTC-228N24.3	0.29	0.17	enet	12	0.22	4.3e-18	-11.0	10.0	1.6e-23	-0.90	0.00	1.00	FALSE
25	GTEx	Spleen	CTC-228N24.3	0.26	0.03	enet	15	0.05	1.8e-02	-1.8	7.6	2.2e-14	-0.66	0.04	0.56	FALSE
26	GTEx	Stomach	SLC12A2	0.23	0.17	enet	19	0.17	1.6e-08	-7.9	8.4	4.0e-17	-0.45	0.80	0.16	FALSE
27	GTEx	Stomach	CTC-228N24.3	0.17	0.04	lasso	6	0.08	1.5e-04	-10.9	11.4	2.6e-30	-0.81	0.02	0.95	FALSE
28	GTEx	Testis	CTC-228N24.3	0.30	0.16	lasso	6	0.14	1.1e-06	-11.8	10.8	4.3e-27	-0.93	0.00	1.00	FALSE
29	GTEx	Thyroid	CTC-228N24.3	0.31	0.15	enet	32	0.18	4.6e-14	-11.8	9.4	3.4e-21	-0.78	0.00	1.00	FALSE
30	METSIM	Adipose	CTC-228N24.3	0.17	0.19	lasso	6	0.18	1.9e-26	-11.8	11.7	1.4e-31	-1.00	0.00	1.00	FALSE
31	ROSMAP	Brain Pre-frontal Cortex	CTC-228N24.3	0.15	0.09	lasso	3	0.12	8.0e-15	-11.8	11.9	1.9e-32	-0.88	0.00	1.00	FALSE
32	The Cancer Genome Atlas	Breast Invasive Carcinoma	FLJ33630	0.05	0.04	enet	14	0.03	2.1e-07	-11.8	12.7	9.0e-37	-0.88	0.00	1.00	TRUE
33	The Cancer Genome Atlas	Glioblastoma Multiforme	FLJ33630	0.38	0.20	lasso	5	0.17	6.5e-06	-11.8	11.7	1.6e-31	-0.99	0.00	1.00	FALSE
34	The Cancer Genome Atlas	Head and Neck Squamous Cell Carcinoma	FLJ33630	0.10	0.07	lasso	3	0.08	7.0e-09	-11.1	11.1	7.7e-29	-0.95	0.00	1.00	FALSE
35	The Cancer Genome Atlas	Kidney Renal Clear Cell Carcinoma	FLJ33630	0.10	0.06	enet	18	0.08	2.0e-09	-11.8	10.8	4.7e-27	-0.79	0.00	1.00	FALSE
36	The Cancer Genome Atlas	Brain Lower Grade Glioma	FLJ33630	0.19	0.16	enet	4	0.16	1.2e-17	-11.8	11.7	1.7e-31	-1.00	0.00	1.00	FALSE
37	The Cancer Genome Atlas	Lung Adenocarcinoma	FLJ33630	0.07	0.05	lasso	1	0.04	1.3e-05	-11.1	11.1	9.1e-29	-0.96	0.01	0.99	FALSE
38	The Cancer Genome Atlas	Lung Squamous Cell Carcinoma	FLJ33630	0.09	0.08	lasso	4	0.09	4.9e-10	-11.8	11.7	2.0e-31	-1.00	0.00	1.00	FALSE
39	The Cancer Genome Atlas	Pancreatic Adenocarcinoma	FLJ33630	0.08	0.03	lasso	2	0.04	5.7e-03	-11.1	11.6	2.6e-31	-0.90	0.01	0.88	FALSE
40	The Cancer Genome Atlas	Prostate Adenocarcinoma	FLJ33630	0.08	0.05	blup	70	0.04	4.4e-05	-11.1	12.7	3.7e-37	-0.86	0.00	1.00	FALSE
41	The Cancer Genome Atlas	Prostate Adenocarcinoma	SLC12A2	0.04	0.02	enet	17	0.02	3.3e-03	-11.1	-7.1	1.0e-12	0.69	0.01	0.86	FALSE
42	The Cancer Genome Atlas	Stomach Adenocarcinoma	FLJ33630	0.07	0.02	blup	70	0.02	1.5e-02	-7.3	8.9	6.0e-19	-0.48	0.12	0.14	FALSE
43	The Cancer Genome Atlas	Testicular Germ Cell Tumors	FLJ33630	0.26	0.14	lasso	3	0.13	2.2e-05	-11.8	11.9	6.9e-33	-0.99	0.00	1.00	FALSE
44	The Cancer Genome Atlas	Thyroid Carcinoma	FLJ33630	0.10	0.10	lasso	2	0.09	5.3e-09	-11.8	11.9	9.6e-33	-1.00	0.00	1.00	FALSE