Best TWAS P=2.23e-09 · Best GWAS P=4.59e-13 conditioned to 0.00818
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | LOC388152 | 0.14 | 0.14 | enet | 20 | 0.18 | 6.7e-22 | 3.47 | -5.3 | 1.3e-07 | 0.52 | 1.00 | 0.00 | TRUE |
2 | GTEx | Artery Tibial | SCAND2P | 0.12 | 0.05 | enet | 16 | 0.08 | 8.7e-07 | -2.75 | -5.2 | 1.8e-07 | 0.38 | 0.36 | 0.44 | TRUE |
3 | GTEx | Brain Cortex | GOLGA6L4 | 0.42 | 0.21 | lasso | 7 | 0.28 | 2.8e-08 | -5.48 | -5.9 | 4.8e-09 | 0.65 | 0.18 | 0.74 | FALSE |
4 | GTEx | Breast Mammary Tissue (Male) | GOLGA6L4 | 0.23 | 0.07 | lasso | 2 | 0.12 | 8.3e-04 | -5.48 | -5.4 | 5.1e-08 | 0.57 | 0.07 | 0.32 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | AC103965.1 | 0.15 | 0.09 | lasso | 7 | 0.11 | 1.3e-08 | 3.49 | -5.2 | 1.6e-07 | 0.56 | 0.69 | 0.30 | FALSE |
6 | GTEx | Colon Transverse | AC103965.1 | 0.15 | 0.07 | enet | 33 | 0.06 | 7.1e-04 | -5.35 | -5.7 | 1.5e-08 | 0.50 | 0.10 | 0.49 | FALSE |
7 | GTEx | Colon Transverse | CSPG4P11 | 0.10 | 0.10 | lasso | 4 | 0.08 | 1.2e-04 | -5.35 | -5.3 | 1.1e-07 | 0.40 | 0.25 | 0.04 | FALSE |
8 | GTEx | Esophagus Mucosa | CSPG4P11 | 0.21 | 0.01 | enet | 28 | 0.08 | 3.7e-06 | -5.35 | -5.2 | 2.1e-07 | 0.56 | 0.64 | 0.28 | FALSE |
9 | GTEx | Esophagus Muscularis | UBE2Q2P1 | 0.34 | 0.03 | lasso | 7 | 0.15 | 1.9e-09 | 2.82 | 6.0 | 2.2e-09 | -0.42 | 0.31 | 0.35 | TRUE |
10 | GTEx | Pancreas | RP11-182J1.16 | 0.08 | -0.01 | enet | 11 | -0.01 | 7.9e-01 | -5.35 | -5.3 | 1.4e-07 | 0.62 | 0.03 | 0.48 | FALSE |
11 | GTEx | Prostate | RP11-182J1.16 | 0.24 | 0.06 | enet | 27 | 0.08 | 6.2e-03 | -0.11 | -5.3 | 1.2e-07 | 0.48 | 0.07 | 0.30 | FALSE |
12 | GTEx | Prostate | CSPG4P11 | 0.34 | 0.07 | enet | 13 | 0.18 | 2.3e-05 | -2.05 | -5.5 | 3.1e-08 | 0.42 | 0.06 | 0.68 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | AC103965.1 | 0.33 | 0.17 | enet | 24 | 0.23 | 4.8e-19 | 3.45 | -5.6 | 2.2e-08 | 0.50 | 1.00 | 0.00 | TRUE |
14 | GTEx | Spleen | GOLGA6L4 | 0.55 | 0.20 | enet | 19 | 0.40 | 2.6e-11 | -5.42 | -5.8 | 7.2e-09 | 0.54 | 0.87 | 0.04 | FALSE |
15 | GTEx | Whole Blood | GOLGA6L4 | 0.12 | 0.08 | enet | 16 | 0.11 | 2.1e-10 | -4.36 | -5.6 | 2.6e-08 | 0.58 | 0.81 | 0.19 | FALSE |