Best TWAS P=5.18e-09 · Best GWAS P=1.95e-07 conditioned to 0.138
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Brain Cerebellum | CDC16 | 0.18 | 0.05 | lasso | 4 | 0.07 | 3.4e-03 | -5.0 | -5.1 | 2.9e-07 | 0.71 | 0.02 | 0.94 | FALSE |
2 | GTEx | Breast Mammary Tissue | CDC16 | 0.25 | 0.28 | lasso | 6 | 0.26 | 6.9e-14 | -5.1 | -5.4 | 8.0e-08 | 0.71 | 0.02 | 0.98 | FALSE |
3 | GTEx | Breast Mammary Tissue (Male) | CDC16 | 0.23 | 0.08 | enet | 11 | 0.09 | 3.8e-03 | -4.6 | -5.6 | 2.1e-08 | 0.71 | 0.04 | 0.82 | FALSE |
4 | GTEx | Breast Mammary Tissue (Female) | CDC16 | 0.25 | 0.22 | enet | 28 | 0.22 | 3.6e-07 | -5.1 | -5.3 | 1.3e-07 | 0.71 | 0.02 | 0.98 | FALSE |
5 | GTEx | Cells Transformed fibroblasts | CDC16 | 0.17 | 0.13 | lasso | 6 | 0.15 | 4.6e-11 | -5.0 | -5.1 | 2.9e-07 | 0.79 | 0.02 | 0.98 | FALSE |
6 | GTEx | Colon Transverse | CDC16 | 0.18 | 0.23 | lasso | 5 | 0.21 | 3.2e-10 | -5.1 | -5.3 | 1.5e-07 | 0.78 | 0.02 | 0.98 | FALSE |
7 | GTEx | Esophagus Gastroesophageal Junction | CDC16 | 0.09 | 0.05 | lasso | 2 | 0.02 | 5.7e-02 | -5.1 | -5.2 | 2.3e-07 | 0.75 | 0.02 | 0.88 | FALSE |
8 | GTEx | Nerve Tibial | CDC16 | 0.23 | 0.23 | enet | 19 | 0.26 | 9.5e-19 | -5.1 | -5.3 | 1.5e-07 | 0.80 | 0.01 | 0.98 | FALSE |
9 | GTEx | Pancreas | CDC16 | 0.09 | 0.14 | lasso | 3 | 0.06 | 1.8e-03 | -5.1 | -5.1 | 3.0e-07 | 0.75 | 0.02 | 0.96 | FALSE |
10 | GTEx | Prostate | CDC16 | 0.17 | 0.16 | lasso | 3 | 0.11 | 1.4e-03 | -5.1 | -5.1 | 3.1e-07 | 0.75 | 0.02 | 0.92 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | CDC16 | 0.31 | 0.33 | lasso | 7 | 0.33 | 4.1e-28 | -5.0 | -5.2 | 1.9e-07 | 0.77 | 0.02 | 0.98 | FALSE |
12 | GTEx | Testis | CDC16 | 0.32 | 0.30 | enet | 26 | 0.35 | 4.4e-16 | -5.1 | -5.8 | 5.2e-09 | 0.71 | 0.01 | 0.98 | TRUE |
13 | The Cancer Genome Atlas | Colon Adenocarcinoma | CDC16 | 0.06 | 0.04 | lasso | 5 | 0.03 | 5.9e-03 | -5.2 | -5.5 | 3.4e-08 | 0.97 | 0.01 | 0.91 | FALSE |
14 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CDC16 | 0.05 | 0.04 | blup | 49 | 0.05 | 2.0e-06 | -5.1 | -5.1 | 3.0e-07 | 0.84 | 0.02 | 0.98 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CDC16 | 0.04 | 0.01 | blup | 49 | 0.03 | 7.7e-03 | -5.1 | -5.2 | 2.3e-07 | 0.72 | 0.02 | 0.93 | FALSE |
16 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | CDC16 | 0.11 | 0.09 | blup | 49 | 0.09 | 1.8e-04 | -5.1 | -5.5 | 5.0e-08 | 0.76 | 0.02 | 0.96 | FALSE |
17 | The Cancer Genome Atlas | Thyroid Carcinoma | CDC16 | 0.06 | 0.09 | lasso | 3 | 0.09 | 3.3e-09 | -5.1 | -5.4 | 6.4e-08 | 0.82 | 0.01 | 0.99 | FALSE |