Best TWAS P=2.76e-14 · Best GWAS P=3.38e-15 conditioned to 0.00371
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | METSIM | Adipose | CADM2 | 0.05 | 0.06 | lasso | 10 | 0.06 | 1.3e-09 | 6.2 | 6.9 | 4.2e-12 | 0.63 | 0.90 | 0.10 | FALSE |
| 2 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CADM2 | 0.06 | 0.00 | blup | 339 | 0.00 | 2.7e-01 | -5.1 | -5.2 | 2.0e-07 | -0.39 | 0.06 | 0.14 | FALSE |
| 3 | The Cancer Genome Atlas | Lung Adenocarcinoma | CADM2 | 0.08 | 0.04 | lasso | 4 | 0.05 | 2.1e-06 | 7.5 | 7.6 | 3.9e-14 | 0.77 | 0.12 | 0.88 | FALSE |
| 4 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CADM2 | 0.05 | 0.03 | lasso | 3 | 0.04 | 5.0e-05 | 7.5 | 7.6 | 2.8e-14 | 0.81 | 0.08 | 0.91 | TRUE |