TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Leg fat-free mass (right)
:
←
→
chr3:84,317,575-86,808,226
Best TWAS P=2.76e-14 · Best GWAS P=3.38e-15 conditioned to 0.00371
84.5M
85M
85.5M
86M
86.5M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
CADM2
0.05
0.03
lasso
3
0.04
5.0e-05
7.5
7.6
2.8e-14
0.81
0.08
0.91
TRUE
3
The Cancer Genome Atlas
Lung Adenocarcinoma
CADM2
0.08
0.04
lasso
4
0.05
2.1e-06
7.5
7.6
3.9e-14
0.77
0.12
0.88
FALSE
1
METSIM
Adipose
CADM2
0.05
0.06
lasso
10
0.06
1.3e-09
6.2
6.9
4.2e-12
0.63
0.90
0.10
FALSE
2
The Cancer Genome Atlas
Brain Lower Grade Glioma
CADM2
0.06
0.00
blup
339
0.00
2.7e-01
-5.1
-5.2
2.0e-07
-0.39
0.06
0.14
FALSE