Best TWAS P=2.11e-14 · Best GWAS P=1.23e-17 conditioned to 9.33e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Visceral Omentum | SLC22A3 | 0.13 | 0.06 | enet | 7 | 0.09 | 1.3e-05 | -6.1 | -6.2 | 5.2e-10 | -0.63 | 0.65 | 0.34 | FALSE |
| 2 | GTEx | Brain Caudate basal ganglia | SLC22A3 | 0.15 | 0.10 | enet | 39 | 0.11 | 5.6e-04 | -7.2 | -7.6 | 2.1e-14 | -0.71 | 0.08 | 0.81 | TRUE |
| 3 | GTEx | Brain Frontal Cortex BA9 | SLC22A3 | 0.26 | 0.08 | lasso | 6 | 0.05 | 1.5e-02 | -4.4 | -6.3 | 3.0e-10 | -0.63 | 0.13 | 0.65 | FALSE |
| 4 | GTEx | Colon Transverse | SLC22A3 | 0.18 | 0.00 | enet | 11 | 0.00 | 5.2e-01 | 4.4 | -5.4 | 7.3e-08 | -0.40 | 0.08 | 0.45 | FALSE |
| 5 | GTEx | Esophagus Mucosa | SLC22A3 | 0.19 | 0.08 | enet | 47 | 0.12 | 1.7e-08 | 6.1 | -6.9 | 5.4e-12 | -0.58 | 0.44 | 0.55 | FALSE |
| 6 | GTEx | Nerve Tibial | SLC22A3 | 0.20 | 0.10 | lasso | 7 | 0.13 | 3.2e-09 | -6.0 | -6.3 | 2.7e-10 | -0.56 | 0.99 | 0.00 | FALSE |
| 7 | GTEx | Ovary | SLC22A3 | 0.33 | 0.29 | lasso | 6 | 0.23 | 2.8e-06 | -5.7 | -5.8 | 5.3e-09 | -0.65 | 0.18 | 0.69 | FALSE |
| 8 | GTEx | Skin Not Sun Exposed Suprapubic | SLC22A3 | 0.15 | 0.05 | lasso | 9 | 0.05 | 9.9e-04 | -4.0 | -6.5 | 6.9e-11 | -0.65 | 0.03 | 0.96 | FALSE |
| 9 | GTEx | Skin Sun Exposed Lower leg | SLC22A3 | 0.29 | 0.14 | lasso | 10 | 0.20 | 3.7e-16 | 3.6 | -5.6 | 2.0e-08 | -0.48 | 1.00 | 0.00 | FALSE |
| 10 | GTEx | Testis | SLC22A3 | 0.19 | 0.01 | lasso | 14 | 0.05 | 2.6e-03 | -8.5 | -5.9 | 4.0e-09 | -0.66 | 0.04 | 0.96 | FALSE |
| 11 | ROSMAP | Brain Pre-frontal Cortex | SLC22A3 | 0.14 | 0.20 | lasso | 10 | 0.19 | 2.4e-24 | -6.1 | -6.4 | 1.2e-10 | -0.67 | 1.00 | 0.00 | FALSE |
| 12 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | LPAL2 | 0.07 | 0.00 | blup | 74 | 0.04 | 1.1e-03 | -3.7 | 5.9 | 2.8e-09 | 0.75 | 0.05 | 0.49 | FALSE |