Best TWAS P=3.54e-08 · Best GWAS P=8.25e-13 conditioned to 7.85e-08
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | HELLS | 0.04 | 0.04 | enet | 12 | 0.04 | 5.1e-06 | 4.6 | 5.5 | 3.5e-08 | 0.41 | 0.97 | 0.01 | TRUE |
| 2 | GTEx | Ovary | HELLS | 0.15 | 0.04 | lasso | 5 | 0.09 | 3.1e-03 | 4.7 | 5.2 | 1.9e-07 | 0.34 | 0.11 | 0.40 | FALSE |
| 3 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TBC1D12 | 0.04 | 0.04 | blup | 63 | 0.03 | 3.9e-04 | 4.6 | 5.2 | 2.0e-07 | 0.49 | 0.02 | 0.91 | FALSE |