Best TWAS P=1.15e-07 · Best GWAS P=9.42e-10 conditioned to 0.00112
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Thyroid | RP11-23P13.6 | 0.07 | 0.00 | lasso | 5 | 0.01 | 0.09600 | -3.0 | 5.3 | 1.1e-07 | 0.66 | 0.05 | 0.55 | TRUE |
| 2 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CHP | 0.06 | 0.01 | blup | 54 | 0.03 | 0.00047 | -3.1 | 5.1 | 2.7e-07 | 0.03 | 0.00 | 0.01 | TRUE |