Best TWAS P=1.72e-11 · Best GWAS P=1.09e-10 conditioned to 0.302
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DHX36 | 0.05 | 0.06 | blup | 357 | 0.05 | 1.3e-06 | -5.7 | -5.8 | 8.8e-09 | -0.55 | 0.41 | 0.59 | FALSE |
2 | GTEx | Adipose Subcutaneous | ARHGEF26 | 0.10 | 0.06 | enet | 8 | 0.07 | 2.2e-06 | -5.7 | 5.8 | 8.9e-09 | 0.47 | 0.32 | 0.67 | FALSE |
3 | GTEx | Artery Tibial | ARHGEF26 | 0.11 | 0.12 | enet | 12 | 0.12 | 5.9e-10 | -5.7 | 5.2 | 1.8e-07 | 0.44 | 0.42 | 0.58 | FALSE |
4 | GTEx | Ovary | ARHGEF26 | 0.14 | 0.03 | enet | 15 | 0.06 | 1.4e-02 | 6.5 | 6.7 | 1.7e-11 | 0.89 | 0.03 | 0.78 | TRUE |
5 | GTEx | Pancreas | ARHGEF26 | 0.26 | 0.26 | lasso | 5 | 0.28 | 3.2e-12 | -5.6 | 6.5 | 5.8e-11 | 0.52 | 0.34 | 0.66 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | ARHGEF26 | 0.13 | 0.11 | lasso | 4 | 0.07 | 6.8e-05 | -5.6 | 6.2 | 5.5e-10 | 0.50 | 0.36 | 0.62 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | ARHGEF26 | 0.10 | 0.08 | enet | 12 | 0.11 | 2.9e-09 | -5.7 | 5.6 | 1.6e-08 | 0.40 | 0.42 | 0.58 | FALSE |
8 | GTEx | Thyroid | ARHGEF26 | 0.09 | 0.07 | enet | 17 | 0.08 | 1.9e-06 | -5.8 | 5.8 | 6.3e-09 | 0.46 | 0.36 | 0.61 | FALSE |
9 | METSIM | Adipose | ARHGEF26 | 0.07 | 0.08 | lasso | 6 | 0.07 | 3.5e-11 | -5.7 | 5.8 | 5.0e-09 | 0.50 | 0.41 | 0.59 | FALSE |
10 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | SGEF | 0.04 | 0.04 | enet | 12 | 0.04 | 1.1e-05 | -5.5 | 6.3 | 4.0e-10 | 0.55 | 0.15 | 0.80 | FALSE |
11 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DHX36 | 0.11 | 0.09 | enet | 11 | 0.10 | 6.4e-12 | -4.9 | -5.1 | 3.0e-07 | -0.57 | 0.96 | 0.04 | FALSE |