TWAS
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Models
Genes
Traits
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Traits
:
Leg fat mass (left)
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chr1:150,310,827-151,793,174
Best TWAS P=5.14e-09 · Best GWAS P=3.06e-08 conditioned to 0.193
150.4M
150.6M
150.8M
151M
151.2M
151.4M
151.6M
151.8M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Brain Lower Grade Glioma
BNIPL
0.03
0.02
blup
35
0.02
6.4e-03
4.4
5.8
5.1e-09
0.82
0.01
0.64
TRUE
3
METSIM
Adipose
BNIPL
0.05
0.01
blup
313
0.03
9.7e-05
3.3
5.5
3.9e-08
0.60
0.16
0.74
FALSE
2
GTEx
Skin Not Sun Exposed Suprapubic
GABPB2
0.12
0.02
enet
10
0.04
2.7e-03
4.8
5.3
1.2e-07
0.85
0.02
0.96
FALSE
1
GTEx
Brain Caudate basal ganglia
SEMA6C
0.35
0.22
lasso
2
0.17
1.1e-05
4.3
5.2
1.8e-07
0.82
0.15
0.54
FALSE