TWAS
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Models
Genes
Traits
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Traits
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Leg fat mass (left)
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chr20:31,981,432-34,274,437
Best TWAS P=9.45e-11 · Best GWAS P=1.75e-10 conditioned to 0.762
32M
32.5M
33M
33.5M
34M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
YFS
Blood
EIF2S2
0.07
0.07
enet
25
0.06
4.3e-20
-6.1
6.5
9.4e-11
-0.90
0.02
0.98
TRUE
1
GTEx
Artery Aorta
GGT7
0.06
0.00
enet
7
0.02
1.9e-02
-5.0
6.3
2.6e-10
-0.38
0.06
0.75
TRUE
3
GTEx
Cells EBV-transformed lymphocytes
NCOA6
0.11
0.06
enet
15
0.06
3.9e-03
4.9
-5.2
1.9e-07
0.43
0.07
0.72
FALSE
4
GTEx
Thyroid
MYH7B
0.06
0.03
enet
15
0.06
3.6e-05
5.2
5.2
2.1e-07
-0.36
0.04
0.95
FALSE
2
GTEx
Breast Mammary Tissue
ITCH
0.09
0.04
enet
28
0.09
2.5e-05
3.3
-5.2
2.3e-07
0.72
0.27
0.70
FALSE