Best TWAS P=1.34e-37 · Best GWAS P=3.11e-34 conditioned to 0.00158
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | DCAF16 | 0.21 | 0.15 | lasso | 3 | 0.17 | 5.1e-14 | 7.0 | 6.6 | 3.7e-11 | -0.24 | 1.00 | 0.00 | FALSE |
| 2 | GTEx | Adipose Visceral Omentum | DCAF16 | 0.19 | 0.06 | enet | 10 | 0.11 | 3.9e-06 | 7.0 | 7.8 | 4.7e-15 | -0.35 | 0.29 | 0.45 | FALSE |
| 3 | GTEx | Artery Aorta | DCAF16 | 0.10 | 0.01 | enet | 6 | 0.02 | 4.7e-02 | -11.4 | 12.8 | 1.3e-37 | -0.81 | 0.05 | 0.77 | TRUE |
| 4 | GTEx | Artery Tibial | DCAF16 | 0.16 | 0.16 | lasso | 5 | 0.13 | 1.5e-10 | 8.3 | 9.3 | 1.6e-20 | -0.36 | 1.00 | 0.00 | FALSE |
| 5 | GTEx | Breast Mammary Tissue | DCAF16 | 0.12 | 0.08 | lasso | 4 | 0.10 | 6.4e-06 | 7.1 | 9.5 | 2.7e-21 | -0.52 | 0.13 | 0.67 | FALSE |
| 6 | GTEx | Breast Mammary Tissue (Male) | DCAF16 | 0.24 | 0.03 | enet | 18 | -0.01 | 4.4e-01 | -10.9 | 10.5 | 6.4e-26 | -0.76 | 0.04 | 0.60 | FALSE |
| 7 | GTEx | Breast Mammary Tissue (Female) | DCAF16 | 0.16 | 0.13 | lasso | 2 | 0.06 | 7.8e-03 | 7.0 | 7.0 | 3.1e-12 | -0.27 | 0.06 | 0.09 | FALSE |
| 8 | GTEx | Esophagus Mucosa | DCAF16 | 0.10 | 0.02 | lasso | 4 | 0.02 | 8.3e-03 | 7.1 | 7.5 | 8.3e-14 | -0.37 | 0.13 | 0.40 | FALSE |
| 9 | GTEx | Esophagus Muscularis | DCAF16 | 0.16 | 0.14 | lasso | 3 | 0.14 | 9.3e-09 | 7.0 | 6.8 | 1.3e-11 | -0.27 | 0.99 | 0.00 | FALSE |
| 10 | GTEx | Nerve Tibial | DCAF16 | 0.16 | 0.14 | lasso | 3 | 0.14 | 2.8e-10 | 7.0 | 8.1 | 8.6e-16 | -0.37 | 0.99 | 0.01 | FALSE |
| 11 | GTEx | Pituitary | DCAF16 | 0.27 | 0.20 | enet | 15 | 0.19 | 1.3e-05 | 7.0 | 7.2 | 6.2e-13 | -0.38 | 0.07 | 0.32 | FALSE |
| 12 | GTEx | Skin Not Sun Exposed Suprapubic | DCAF16 | 0.16 | 0.08 | lasso | 5 | 0.12 | 4.4e-07 | 8.1 | 8.9 | 6.0e-19 | -0.35 | 0.64 | 0.04 | FALSE |
| 13 | GTEx | Skin Sun Exposed Lower leg | DCAF16 | 0.14 | 0.12 | enet | 14 | 0.12 | 5.4e-10 | 7.1 | 7.9 | 2.3e-15 | -0.28 | 1.00 | 0.00 | FALSE |
| 14 | GTEx | Spleen | DCAF16 | 0.35 | 0.02 | lasso | 5 | 0.11 | 8.5e-04 | 7.0 | 11.2 | 5.7e-29 | -0.66 | 0.05 | 0.58 | FALSE |
| 15 | GTEx | Stomach | DCAF16 | 0.21 | 0.04 | lasso | 6 | 0.02 | 5.6e-02 | 8.1 | 9.1 | 1.1e-19 | -0.26 | 0.19 | 0.05 | FALSE |
| 16 | GTEx | Thyroid | DCAF16 | 0.11 | 0.02 | lasso | 5 | 0.03 | 2.3e-03 | 7.0 | 10.4 | 1.8e-25 | -0.54 | 0.17 | 0.70 | FALSE |
| 17 | ROSMAP | Brain Pre-frontal Cortex | FAM184B | 0.17 | 0.14 | enet | 31 | 0.18 | 5.1e-23 | -4.2 | -5.5 | 3.2e-08 | 0.26 | 1.00 | 0.00 | FALSE |
| 18 | ROSMAP | Brain Pre-frontal Cortex | MED28 | 0.02 | 0.01 | bslmm | 411 | 0.00 | 1.9e-01 | -4.1 | 5.2 | 1.9e-07 | -0.30 | 0.22 | 0.03 | FALSE |
| 19 | ROSMAP | Brain Pre-frontal Cortex | DCAF16 | 0.04 | 0.02 | bslmm | 379 | 0.01 | 3.9e-02 | -10.9 | 10.5 | 1.3e-25 | -0.83 | 0.03 | 0.89 | FALSE |
| 20 | YFS | Blood | DCAF16 | 0.02 | 0.02 | lasso | 1 | 0.01 | 1.1e-04 | 8.3 | 8.3 | 9.2e-17 | -0.25 | 0.84 | 0.04 | FALSE |
| 21 | The Cancer Genome Atlas | Colon Adenocarcinoma | NCAPG | 0.08 | 0.04 | blup | 34 | 0.09 | 1.1e-05 | -11.1 | -9.8 | 1.2e-22 | 0.84 | 0.01 | 0.99 | FALSE |
| 22 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NCAPG | 0.14 | 0.07 | lasso | 3 | 0.07 | 5.2e-08 | -10.9 | -10.7 | 1.1e-26 | 0.84 | 0.27 | 0.73 | FALSE |
| 23 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DCAF16 | 0.09 | 0.02 | lasso | 3 | 0.04 | 5.2e-05 | 8.3 | 11.9 | 1.5e-32 | -0.64 | 0.09 | 0.78 | FALSE |
| 24 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NCAPG | 0.02 | 0.03 | lasso | 1 | 0.02 | 9.0e-04 | -11.1 | -11.1 | 1.3e-28 | 0.88 | 0.02 | 0.65 | FALSE |
| 25 | The Cancer Genome Atlas | Lung Adenocarcinoma | NCAPG | 0.06 | 0.02 | blup | 34 | 0.04 | 1.0e-05 | -11.1 | -7.4 | 1.6e-13 | 0.68 | 0.02 | 0.84 | FALSE |
| 26 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DCAF16 | 0.04 | 0.04 | blup | 31 | 0.04 | 2.2e-05 | 7.0 | 10.4 | 1.8e-25 | -0.58 | 0.28 | 0.21 | FALSE |
| 27 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NCAPG | 0.02 | 0.02 | blup | 34 | 0.02 | 3.4e-03 | -9.9 | -9.1 | 1.4e-19 | 0.76 | 0.03 | 0.47 | FALSE |
| 28 | The Cancer Genome Atlas | Thyroid Carcinoma | DCAF16 | 0.07 | 0.04 | blup | 31 | 0.07 | 4.9e-07 | 8.1 | 11.4 | 5.5e-30 | -0.65 | 0.14 | 0.79 | FALSE |