Best TWAS P=2.03e-12 · Best GWAS P=2.25e-16 conditioned to 0.00557
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adrenal Gland | DYM | 0.30 | 0.01 | enet | 15 | 0.01 | 1.2e-01 | 7.9 | 7.0 | 2.0e-12 | 0.81 | 0.03 | 0.82 | TRUE |
2 | GTEx | Esophagus Mucosa | DYM | 0.12 | 0.01 | enet | 12 | 0.04 | 1.0e-03 | 8.0 | 5.9 | 3.4e-09 | 0.73 | 0.02 | 0.96 | FALSE |
3 | YFS | Blood | DYM | 0.05 | 0.05 | lasso | 4 | 0.04 | 1.5e-13 | -4.2 | 5.7 | 9.8e-09 | 0.76 | 1.00 | 0.00 | FALSE |
4 | The Cancer Genome Atlas | Colon Adenocarcinoma | C18orf32 | 0.05 | 0.05 | lasso | 5 | 0.04 | 3.5e-03 | -5.5 | 5.4 | 5.3e-08 | 0.41 | 0.03 | 0.48 | FALSE |
5 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C18orf32 | 0.04 | 0.03 | blup | 48 | 0.04 | 6.5e-05 | 4.7 | 6.6 | 3.8e-11 | 0.57 | 0.00 | 0.99 | TRUE |