Best TWAS P=3.02e-10 · Best GWAS P=4.1e-09 conditioned to 0.00186
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | METTL21A | 0.10 | 0.02 | lasso | 4 | 0.02 | 1.6e-02 | -4.8 | 5.5 | 4.6e-08 | 0.32 | 0.16 | 0.34 | FALSE |
2 | GTEx | Brain Putamen basal ganglia | NDUFS1 | 0.16 | 0.06 | enet | 6 | 0.05 | 2.9e-02 | -4.5 | 5.3 | 1.4e-07 | 0.03 | 0.04 | 0.68 | FALSE |
3 | GTEx | Cells Transformed fibroblasts | CREB1 | 0.15 | 0.00 | enet | 7 | 0.00 | 2.8e-01 | -4.9 | -6.3 | 3.0e-10 | -0.50 | 0.10 | 0.56 | TRUE |
4 | GTEx | Colon Sigmoid | AC007383.4 | 0.15 | 0.14 | enet | 13 | 0.09 | 3.8e-04 | -4.8 | 5.2 | 1.8e-07 | 0.02 | 0.02 | 0.96 | FALSE |
5 | GTEx | Esophagus Gastroesophageal Junction | NDUFS1 | 0.16 | 0.09 | enet | 22 | 0.03 | 2.4e-02 | -4.8 | 5.5 | 4.0e-08 | 0.01 | 0.02 | 0.94 | TRUE |
6 | GTEx | Esophagus Mucosa | METTL21A | 0.10 | 0.10 | enet | 9 | 0.12 | 1.8e-08 | -4.8 | 5.3 | 9.7e-08 | 0.57 | 0.27 | 0.72 | FALSE |
7 | GTEx | Esophagus Muscularis | NDUFS1 | 0.17 | 0.19 | enet | 21 | 0.18 | 5.1e-11 | -4.8 | 5.1 | 2.8e-07 | -0.02 | 0.02 | 0.97 | FALSE |
8 | GTEx | Heart Atrial Appendage | AC007383.4 | 0.12 | 0.10 | enet | 21 | 0.09 | 9.8e-05 | -4.9 | 5.1 | 2.8e-07 | 0.00 | 0.03 | 0.97 | FALSE |
9 | GTEx | Heart Left Ventricle | AC007383.4 | 0.17 | 0.13 | enet | 19 | 0.16 | 9.7e-09 | -4.8 | 5.1 | 2.9e-07 | 0.00 | 0.02 | 0.97 | FALSE |
10 | GTEx | Nerve Tibial | AC007383.4 | 0.14 | 0.06 | lasso | 6 | 0.05 | 3.0e-04 | -4.9 | 5.3 | 1.3e-07 | 0.01 | 0.02 | 0.97 | FALSE |
11 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CREB1 | 0.03 | 0.01 | blup | 64 | 0.01 | 2.5e-02 | -5.2 | -5.4 | 6.8e-08 | -0.49 | 0.09 | 0.53 | FALSE |
12 | The Cancer Genome Atlas | Breast Invasive Carcinoma | FAM119A | 0.04 | 0.02 | blup | 51 | 0.03 | 1.0e-06 | -4.6 | 5.4 | 8.1e-08 | 0.64 | 0.03 | 0.96 | FALSE |
13 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CREB1 | 0.11 | 0.02 | enet | 7 | 0.02 | 1.7e-03 | 4.5 | -5.3 | 1.4e-07 | -0.70 | 0.01 | 0.85 | FALSE |
14 | The Cancer Genome Atlas | Prostate Adenocarcinoma | FAM119A | 0.09 | 0.12 | lasso | 2 | 0.12 | 4.4e-12 | -4.8 | 5.3 | 1.2e-07 | 0.50 | 0.02 | 0.97 | FALSE |