TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat mass (left)
:
←
→
chr1:71,163,715-73,435,171
Best TWAS P=2.45e-16 · Best GWAS P=1.5e-19 conditioned to 5.91e-09
71.5M
72M
72.5M
73M
73.5M
0
5
10
15
20
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
ROSMAP
Brain Pre-frontal Cortex
NEGR1
0.24
0.15
lasso
8
0.22
1.3e-27
5.7
8.2
2.4e-16
-0.48
0.36
0.64
TRUE
1
GTEx
Esophagus Muscularis
NEGR1
0.13
0.04
lasso
3
0.05
5.1e-04
-5.3
6.2
4.9e-10
-0.66
0.71
0.12
FALSE