TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat mass (left)
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chr17:1,517,914-2,918,626
Best TWAS P=3.83e-09 · Best GWAS P=8.44e-19 conditioned to 5.28e-13
1.6M
1.8M
2M
2.2M
2.4M
2.6M
2.8M
3M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Liver
SRR
0.31
0.00
lasso
7
0.00
0.30
-6.5
5.9
3.8e-09
-0.36
0.06
0.14
TRUE
2
The Cancer Genome Atlas
Testicular Germ Cell Tumors
SGSM2
0.13
0.01
blup
81
0.01
0.11
4.4
-5.4
8.7e-08
0.07
0.01
0.51
FALSE