TWAS
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Traits
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Traits
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Arm fat mass (left)
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chr3:195,279,119-196,855,644
Best TWAS P=4.56e-08 · Best GWAS P=4.88e-07 conditioned to 0.17
195.2M
195.4M
195.6M
195.8M
196M
196.2M
196.4M
196.6M
196.8M
0
1
2
3
4
5
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
UBXN7
0.02
0.01
blup
45
0.02
0.0042
3.9
-5.5
4.6e-08
-0.76
0.01
0.45
TRUE
2
GTEx
Stomach
SLC51A
0.13
0.06
enet
12
0.03
0.0193
4.5
-5.4
8.4e-08
-0.86
0.02
0.92
FALSE
4
The Cancer Genome Atlas
Soft Tissue Sarcoma
PCYT1A
0.12
0.05
blup
68
0.06
0.0002
4.6
-5.2
1.8e-07
-0.75
0.01
0.85
FALSE
1
GTEx
Breast Mammary Tissue
UBXN7
0.20
0.00
enet
16
0.02
0.0352
-4.2
-5.2
2.4e-07
-0.65
0.03
0.82
FALSE