TWAS
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Traits
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Traits
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Arm fat-free mass (left)
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chr17:39,993,748-41,418,334
Best TWAS P=5.1e-08 · Best GWAS P=1.57e-07 conditioned to 0.117
40M
40.2M
40.4M
40.6M
40.8M
41M
41.2M
41.4M
0
2
4
6
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
NAGLU
0.13
0.02
enet
8
0.04
1.6e-05
4.0
-5.5
5.1e-08
0.78
0.01
0.86
TRUE
2
GTEx
Adipose Subcutaneous
HSD17B1P1
0.06
0.09
enet
6
0.09
4.0e-08
-4.9
-5.4
5.3e-08
0.92
0.03
0.97
FALSE
3
GTEx
Skin Sun Exposed Lower leg
NAGLU
0.08
0.06
enet
9
0.09
5.8e-08
4.0
-5.3
1.4e-07
0.84
0.02
0.97
FALSE
4
The Cancer Genome Atlas
Colon Adenocarcinoma
CNTNAP1
0.06
0.05
blup
27
0.03
7.3e-03
-5.0
5.3
1.4e-07
-0.95
0.01
0.93
FALSE
1
CommonMind
Brain Pre-frontal Cortex
MLX
0.03
0.03
enet
12
0.02
6.5e-04
-5.2
-5.2
2.5e-07
0.94
0.02
0.97
FALSE