Best TWAS P=3.96e-12 · Best GWAS P=8.49e-15 conditioned to 5.88e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Visceral Omentum | SLC22A3 | 0.13 | 0.06 | enet | 7 | 0.09 | 1.3e-05 | -5.5 | -5.5 | 3.4e-08 | -0.63 | 0.54 | 0.44 | FALSE |
| 2 | GTEx | Brain Caudate basal ganglia | SLC22A3 | 0.15 | 0.10 | enet | 39 | 0.11 | 5.6e-04 | -6.5 | -6.9 | 4.0e-12 | -0.71 | 0.05 | 0.88 | TRUE |
| 3 | GTEx | Brain Frontal Cortex BA9 | SLC22A3 | 0.26 | 0.08 | lasso | 6 | 0.05 | 1.5e-02 | -4.3 | -5.8 | 5.1e-09 | -0.62 | 0.14 | 0.60 | FALSE |
| 4 | GTEx | Esophagus Mucosa | SLC22A3 | 0.19 | 0.08 | enet | 47 | 0.12 | 1.7e-08 | 5.4 | -6.2 | 5.3e-10 | -0.58 | 0.60 | 0.40 | FALSE |
| 5 | GTEx | Nerve Tibial | SLC22A3 | 0.20 | 0.10 | lasso | 7 | 0.13 | 3.2e-09 | -5.5 | -5.9 | 3.3e-09 | -0.56 | 0.99 | 0.00 | FALSE |
| 6 | GTEx | Ovary | SLC22A3 | 0.33 | 0.29 | lasso | 6 | 0.23 | 2.8e-06 | -4.9 | -5.2 | 2.0e-07 | -0.65 | 0.13 | 0.78 | FALSE |
| 7 | GTEx | Skin Not Sun Exposed Suprapubic | SLC22A3 | 0.15 | 0.05 | lasso | 9 | 0.05 | 9.9e-04 | -3.2 | -5.7 | 1.4e-08 | -0.65 | 0.08 | 0.89 | FALSE |
| 8 | ROSMAP | Brain Pre-frontal Cortex | SLC22A3 | 0.14 | 0.20 | lasso | 10 | 0.19 | 2.4e-24 | -5.3 | -5.7 | 1.2e-08 | -0.67 | 1.00 | 0.00 | FALSE |
| 9 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | LPAL2 | 0.07 | 0.00 | blup | 74 | 0.04 | 1.1e-03 | -3.5 | 5.4 | 6.1e-08 | 0.75 | 0.04 | 0.55 | FALSE |