Best TWAS P=6.02e-12 · Best GWAS P=9.55e-14 conditioned to 6.36e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Artery Tibial | FRZB | 0.14 | 0.04 | enet | 16 | 0.05 | 9.6e-05 | -2.5 | -5.2 | 1.9e-07 | 0.27 | 0.92 | 0.01 | FALSE |
| 2 | GTEx | Brain Hypothalamus | PDE1A | 0.24 | -0.01 | enet | 21 | -0.01 | 7.6e-01 | 5.7 | 6.9 | 6.0e-12 | -0.53 | 0.06 | 0.35 | TRUE |
| 3 | GTEx | Liver | NCKAP1 | 0.50 | -0.01 | lasso | 10 | 0.01 | 1.4e-01 | 4.6 | 5.9 | 3.3e-09 | -0.07 | 0.05 | 0.08 | TRUE |
| 4 | GTEx | Skin Sun Exposed Lower leg | PDE1A | 0.11 | 0.07 | lasso | 4 | 0.04 | 6.0e-04 | 5.0 | -5.5 | 3.7e-08 | 0.37 | 0.23 | 0.74 | FALSE |
| 5 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PDE1A | 0.03 | 0.01 | blup | 209 | 0.02 | 1.3e-05 | -0.5 | 5.3 | 1.2e-07 | -0.42 | 0.46 | 0.05 | FALSE |
| 6 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | PDE1A | 0.05 | 0.04 | blup | 206 | 0.04 | 5.0e-05 | -5.0 | 5.7 | 1.5e-08 | -0.41 | 0.65 | 0.02 | FALSE |