Best TWAS P=2.32e-07 · Best GWAS P=2.99e-08 conditioned to 9.81e-05
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Breast Invasive Carcinoma | KCNG3 | 0.03 | 0.02 | lasso | 2 | 0.02 | 4.8e-05 | -4.8 | 5.1 | 2.7e-07 | 0.52 | 0.03 | 0.71 | FALSE |
| 2 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | OXER1 | 0.05 | 0.04 | lasso | 2 | 0.03 | 8.9e-05 | -4.8 | 5.2 | 2.3e-07 | 0.37 | 0.01 | 0.97 | TRUE |