Best TWAS P=1.58e-15 · Best GWAS P=1.31e-14 conditioned to 0.00952
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Brain Caudate basal ganglia | DMGDH | 0.25 | 0.08 | enet | 23 | 0.15 | 3.5e-05 | -3.4 | -5.1 | 3.1e-07 | -0.05 | 0.02 | 0.11 | TRUE |
| 2 | METSIM | Adipose | AP3B1 | 0.07 | 0.01 | blup | 556 | 0.02 | 2.4e-04 | 3.4 | -5.2 | 1.9e-07 | 0.54 | 0.10 | 0.79 | FALSE |
| 3 | YFS | Blood | AP3B1 | 0.25 | 0.22 | lasso | 9 | 0.23 | 2.6e-74 | 5.9 | -6.1 | 1.0e-09 | 0.30 | 1.00 | 0.00 | FALSE |
| 4 | The Cancer Genome Atlas | Breast Invasive Carcinoma | AP3B1 | 0.02 | 0.00 | blup | 126 | 0.01 | 1.8e-02 | -7.7 | -7.9 | 3.3e-15 | 0.85 | 0.02 | 0.90 | FALSE |
| 5 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | AP3B1 | 0.16 | 0.06 | enet | 18 | 0.09 | 2.2e-05 | 6.1 | -6.2 | 6.2e-10 | 0.52 | 0.05 | 0.46 | FALSE |
| 6 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | AP3B1 | 0.08 | 0.01 | enet | 20 | 0.02 | 9.7e-04 | -7.4 | -5.8 | 6.1e-09 | 0.60 | 0.01 | 0.84 | FALSE |
| 7 | The Cancer Genome Atlas | Lung Adenocarcinoma | AP3B1 | 0.05 | 0.03 | lasso | 3 | 0.04 | 4.4e-05 | 6.1 | -5.3 | 1.1e-07 | 0.38 | 0.40 | 0.30 | FALSE |
| 8 | The Cancer Genome Atlas | Prostate Adenocarcinoma | AP3B1 | 0.05 | 0.02 | blup | 126 | 0.03 | 5.0e-04 | 6.4 | -8.0 | 1.6e-15 | 0.81 | 0.02 | 0.91 | TRUE |
| 9 | The Cancer Genome Atlas | Thyroid Carcinoma | AP3B1 | 0.11 | 0.06 | lasso | 2 | 0.05 | 1.3e-05 | 5.9 | -5.4 | 5.8e-08 | 0.20 | 0.59 | 0.05 | FALSE |